1dqk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1dqk" [edit=sysop:move=sysop])
Current revision (06:57, 7 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1dqk.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF SUPEROXIDE REDUCTASE IN THE REDUCED STATE AT 2.0 ANGSTROMS RESOLUTION==
-
The line below this paragraph, containing "STRUCTURE_1dqk", creates the "Structure Box" on the page.
+
<StructureSection load='1dqk' size='340' side='right'caption='[[1dqk]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1dqk]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DQK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DQK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
-
{{STRUCTURE_1dqk| PDB=1dqk | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dqk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dqk OCA], [https://pdbe.org/1dqk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dqk RCSB], [https://www.ebi.ac.uk/pdbsum/1dqk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dqk ProSAT]</span></td></tr>
-
 
+
</table>
-
===CRYSTAL STRUCTURE OF SUPEROXIDE REDUCTASE IN THE REDUCED STATE AT 2.0 ANGSTROMS RESOLUTION===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/SOR_PYRFU SOR_PYRFU] Uses electrons from reduced NADP, by way of rubredoxin and an oxidoreductase, to catalyze the reduction of superoxide to hydrogen peroxide.
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_10704199}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 10704199 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dq/1dqk_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_10704199}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[1dqk]] is a 4 chain structure of [[Superoxide Reductase]] with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DQK OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dqk ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Superoxide Reductase]]
+
*[[Superoxide Reductase|Superoxide Reductase]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:10704199</ref><references group="xtra"/>
+
[[Category: Large Structures]]
[[Category: Pyrococcus furiosus]]
[[Category: Pyrococcus furiosus]]
-
[[Category: Adams, M W.W.]]
+
[[Category: Adams MWW]]
-
[[Category: Hu, Y.]]
+
[[Category: Hu Y]]
-
[[Category: Jenney, F E.]]
+
[[Category: Jenney Jr FE]]
-
[[Category: Rees, D C.]]
+
[[Category: Rees DC]]
-
[[Category: Yeh, A P.]]
+
[[Category: Yeh AP]]
-
[[Category: Non-heme mononuclear iron protein]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

CRYSTAL STRUCTURE OF SUPEROXIDE REDUCTASE IN THE REDUCED STATE AT 2.0 ANGSTROMS RESOLUTION

PDB ID 1dqk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1dqk"
Personal tools