3e6r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "3e6r" [edit=sysop:move=sysop])
Current revision (09:45, 21 February 2024) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3e6r.png|left|200px]]
 
-
<!--
+
==Crystal structure of apo-ferritin from Pseudo-nitzschia multiseries==
-
The line below this paragraph, containing "STRUCTURE_3e6r", creates the "Structure Box" on the page.
+
<StructureSection load='3e6r' size='340' side='right'caption='[[3e6r]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3e6r]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudo-nitzschia_multiseries Pseudo-nitzschia multiseries]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E6R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E6R FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_3e6r| PDB=3e6r | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e6r OCA], [https://pdbe.org/3e6r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e6r RCSB], [https://www.ebi.ac.uk/pdbsum/3e6r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e6r ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal structure of apo-ferritin from Pseudo-nitzschia multiseries===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/B6DMH6_PSEMU B6DMH6_PSEMU] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.[RuleBase:RU361145]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_19037243}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 19037243 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e6/3e6r_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_19037243}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[3e6r]] is a 6 chain structure of [[Ferritin]] with sequence from [http://en.wikipedia.org/wiki/Eukaryota Eukaryota]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E6R OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e6r ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Ferritin]]
+
*[[Ferritin 3D structures|Ferritin 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:19037243</ref><references group="xtra"/>
+
[[Category: Large Structures]]
-
[[Category: Eukaryota]]
+
[[Category: Pseudo-nitzschia multiseries]]
-
[[Category: Ferroxidase]]
+
[[Category: Arrieta AL]]
-
[[Category: Arrieta, A L.]]
+
[[Category: Murphy MEP]]
-
[[Category: Murphy, M E.P.]]
+
-
[[Category: Apoferritin]]
+
-
[[Category: Ferritin]]
+
-
[[Category: Ferroxidase]]
+
-
[[Category: Iron storage]]
+
-
[[Category: Oxidoreductase]]
+

Current revision

Crystal structure of apo-ferritin from Pseudo-nitzschia multiseries

PDB ID 3e6r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools