This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1q5c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1q5c" [edit=sysop:move=sysop])
Current revision (06:01, 17 April 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1q5c.png|left|200px]]
 
-
<!--
+
==S-S-lambda-shaped TRANS and CIS interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography==
-
The line below this paragraph, containing "STRUCTURE_1q5c", creates the "Structure Box" on the page.
+
<SX load='1q5c' size='340' side='right' viewer='molstar' caption='[[1q5c]], [[Resolution|resolution]] 30.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1q5c]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. The March 2008 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Cadherin'' by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2008_3 10.2210/rcsb_pdb/mom_2008_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Q5C FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 30&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene></td></tr>
-
{{STRUCTURE_1q5c| PDB=1q5c | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1q5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1q5c OCA], [https://pdbe.org/1q5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1q5c RCSB], [https://www.ebi.ac.uk/pdbsum/1q5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1q5c ProSAT]</span></td></tr>
-
 
+
</table>
-
===S-S-lambda-shaped TRANS and CIS interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography===
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
<!--
+
<jmolCheckbox>
-
The line below this paragraph, {{ABSTRACT_PUBMED_14526082}}, adds the Publication Abstract to the page
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/q5/1q5c_consurf.spt"</scriptWhenChecked>
-
(as it appears on PubMed at http://www.pubmed.gov), where 14526082 is the PubMed ID number.
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
-->
+
<text>to colour the structure by Evolutionary Conservation</text>
-
{{ABSTRACT_PUBMED_14526082}}
+
</jmolCheckbox>
-
 
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1q5c ConSurf].
-
==About this Structure==
+
<div style="clear:both"></div>
-
[[1q5c]] is a 4 chain structure of [[Cadherin]] with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. The March 2008 RCSB PDB [http://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Cadherin'' by David S. Goodsell is [http://dx.doi.org/10.2210/rcsb_pdb/mom_2008_3 10.2210/rcsb_pdb/mom_2008_3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Q5C OCA].
+
==See Also==
==See Also==
-
*[[Cadherin]]
+
*[[Cadherin 3D structures|Cadherin 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</SX>
-
<ref group="xtra">PMID:14526082</ref><references group="xtra"/>
+
[[Category: Cadherin]]
[[Category: Cadherin]]
 +
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
[[Category: RCSB PDB Molecule of the Month]]
[[Category: RCSB PDB Molecule of the Month]]
-
[[Category: Cowin, P.]]
+
[[Category: Cowin P]]
-
[[Category: He, W.]]
+
[[Category: He W]]
-
[[Category: Stokes, D L.]]
+
[[Category: Stokes DL]]
-
[[Category: Adhesion]]
+
-
[[Category: Cadherin]]
+
-
[[Category: Desmosome]]
+
-
[[Category: Junction]]
+
-
[[Category: Structural protein]]
+
-
[[Category: Trans interaction]]
+

Current revision

S-S-lambda-shaped TRANS and CIS interactions of cadherins model based on fitting C-cadherin (1L3W) to 3D map of desmosomes obtained by electron tomography

1q5c, resolution 30.00Å

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1q5c"
Personal tools