2wj0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:59, 13 December 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2wj0.png|left|200px]]
 
-
<!--
+
==Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate==
-
The line below this paragraph, containing "STRUCTURE_2wj0", creates the "Structure Box" on the page.
+
<StructureSection load='2wj0' size='340' side='right'caption='[[2wj0]], [[Resolution|resolution]] 3.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2wj0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJ0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WJ0 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NCO:COBALT+HEXAMMINE(III)'>NCO</scene></td></tr>
-
{{STRUCTURE_2wj0| PDB=2wj0 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wj0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wj0 OCA], [https://pdbe.org/2wj0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wj0 RCSB], [https://www.ebi.ac.uk/pdbsum/2wj0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wj0 ProSAT]</span></td></tr>
-
 
+
</table>
-
===CRYSTAL STRUCTURES OF HOLLIDAY JUNCTION RESOLVASES FROM ARCHAEOGLOBUS FULGIDUS BOUND TO DNA SUBSTRATE===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/HJC_ARCFU HJC_ARCFU] A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products.[HAMAP-Rule:MF_01490]
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[2wj0]] is a 4 chain structure of [[Resolvase]] with sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WJ0 OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wj/2wj0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wj0 ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Resolvase]]
+
*[[Resolvase 3D structures|Resolvase 3D structures]]
 +
__TOC__
 +
</StructureSection>
[[Category: Archaeoglobus fulgidus]]
[[Category: Archaeoglobus fulgidus]]
-
[[Category: Basquin, J.]]
+
[[Category: Large Structures]]
-
[[Category: Carolis, C.]]
+
[[Category: Synthetic construct]]
-
[[Category: Koehler, C.]]
+
[[Category: Basquin J]]
-
[[Category: Sauter, C.]]
+
[[Category: Carolis C]]
-
[[Category: Suck, D.]]
+
[[Category: Koehler C]]
-
[[Category: Toeroe, I.]]
+
[[Category: Sauter C]]
-
[[Category: Dna binding protein]]
+
[[Category: Suck D]]
-
[[Category: Holliday junction resolvase]]
+
[[Category: Toeroe I]]
-
[[Category: Hydrolase]]
+
-
[[Category: Hydrolase dna complex]]
+
-
[[Category: Hydrolase/dna complex]]
+
-
[[Category: Type ii restriction endonuclease]]
+

Current revision

Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate

PDB ID 2wj0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools