1ybd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1ybd" [edit=sysop:move=sysop])
Current revision (08:01, 15 May 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ybd.png|left|200px]]
 
-
<!--
+
==Crystal structure analysis of uridylate kinase from Neisseria meningitidis==
-
The line below this paragraph, containing "STRUCTURE_1ybd", creates the "Structure Box" on the page.
+
<StructureSection load='1ybd' size='340' side='right'caption='[[1ybd]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ybd]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YBD FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_1ybd| PDB=1ybd | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ybd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ybd OCA], [https://pdbe.org/1ybd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ybd RCSB], [https://www.ebi.ac.uk/pdbsum/1ybd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ybd ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ybd TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PYRH_NEIMB PYRH_NEIMB] Catalyzes the reversible phosphorylation of UMP to UDP.<ref>PMID:17210578</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yb/1ybd_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ybd ConSurf].
 +
<div style="clear:both"></div>
-
===Crystal structure analysis of uridylate kinase from Neisseria meningitidis===
+
==See Also==
-
 
+
*[[Uridylate kinase|Uridylate kinase]]
-
 
+
== References ==
-
==About this Structure==
+
<references/>
-
[[1ybd]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Neisseria_meningitidis Neisseria meningitidis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YBD OCA].
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Neisseria meningitidis]]
[[Category: Neisseria meningitidis]]
-
[[Category: Burley, S K.]]
+
[[Category: Burley SK]]
-
[[Category: Kumaran, D.]]
+
[[Category: Kumaran D]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
+
[[Category: Swaminathan S]]
-
[[Category: Swaminathan, S.]]
+
-
[[Category: Alpha/beta/alpha fold]]
+
-
[[Category: Hexamer]]
+
-
[[Category: Kinase]]
+
-
[[Category: New york sgx research center for structural genomic]]
+
-
[[Category: Nysgxrc]]
+
-
[[Category: Protein structure initiative]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
[[Category: T1843]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure analysis of uridylate kinase from Neisseria meningitidis

PDB ID 1ybd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ybd"
Personal tools