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2rdm
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2rdm" size="350" color="white" frame="true" align="right" spinBox="true" caption="2rdm, resolution 1.76Å" /> '''Crystal structure of...) |
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| - | [[Image:2rdm.jpg|left|200px]]<br /><applet load="2rdm" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2rdm, resolution 1.76Å" /> | ||
| - | '''Crystal structure of response regulator receiver protein from Sinorhizobium medicae WSM419'''<br /> | ||
| - | == | + | ==Crystal structure of response regulator receiver protein from Sinorhizobium medicae WSM419== |
| - | + | <StructureSection load='2rdm' size='340' side='right'caption='[[2rdm]], [[Resolution|resolution]] 1.76Å' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | + | <table><tr><td colspan='2'>[[2rdm]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Ensifer_medicae Ensifer medicae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RDM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RDM FirstGlance]. <br> | |
| - | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | |
| - | [[ | + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | [[ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Smed_4830 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=366394 Ensifer medicae])</td></tr> |
| - | [[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rdm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rdm OCA], [https://pdbe.org/2rdm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rdm RCSB], [https://www.ebi.ac.uk/pdbsum/2rdm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rdm ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2rdm TOPSAN]</span></td></tr> |
| - | + | </table> | |
| - | [ | + | == Evolutionary Conservation == |
| - | [ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | [ | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rd/2rdm_consurf.spt"</scriptWhenChecked> |
| - | [ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| - | [ | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [ | + | </jmolCheckbox> |
| - | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rdm ConSurf]. | |
| - | + | <div style="clear:both"></div> | |
| - | [[ | + | |
| - | + | ||
| - | + | ||
| - | [ | + | |
| - | [[ | + | |
| - | [ | + | |
| - | + | ==See Also== | |
| + | *[[Response regulator 3D structure|Response regulator 3D structure]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Ensifer medicae]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Almo, S C]] | ||
| + | [[Category: Burley, S K]] | ||
| + | [[Category: Gilmore, M]] | ||
| + | [[Category: Groshong, C]] | ||
| + | [[Category: Hu, S]] | ||
| + | [[Category: Meyer, A J]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Patskovsky, Y]] | ||
| + | [[Category: Rodgers, L]] | ||
| + | [[Category: Sauder, J M]] | ||
| + | [[Category: Toro, R]] | ||
| + | [[Category: Yan, Q]] | ||
| + | [[Category: Zhan, C]] | ||
| + | [[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Unknown function]] | ||
Current revision
Crystal structure of response regulator receiver protein from Sinorhizobium medicae WSM419
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Categories: Ensifer medicae | Large Structures | Almo, S C | Burley, S K | Gilmore, M | Groshong, C | Hu, S | Meyer, A J | Structural genomic | Patskovsky, Y | Rodgers, L | Sauder, J M | Toro, R | Yan, Q | Zhan, C | NYSGXRC, New York SGX Research Center for Structural Genomics | PSI, Protein structure initiative | Unknown function
