|
|
| (22 intermediate revisions not shown.) |
| Line 1: |
Line 1: |
| - | [[Image:RPS9.png|left|200px|thumb|Crystal Structure of Ribosomal protein S9 from [[2zm6]], chain I]]
| + | <StructureSection load='' size='350' side='right' caption='Ribosomal protein S9 from [[2zm6]], chain I' scene='Ribosomal_protein_S9/Cv/1'> |
| - | {{STRUCTURE_2zm6| PDB=2zm6 | SIZE=300| SCENE=Ribosomal_protein_S9/Cv/1 |right|CAPTION=Ribosomal protein S9 from [[2zm6]], chain I }}
| + | |
| | | | |
| - | [[Ribosomal protein S9]] (RPS9) is one of the 22 proteins which belong to the <scene name='Ribosomal_protein_S8/Cv/2'>small subunit</scene> of the [http://en.wikipedia.org/wiki/Bacteria bacterial] [[ribosome]]. The images at the left and at the right correspond to one representative RPS9, ''i.e.'' the crystal structure of Ribosomal protein S9 from ''Thermus thermophilus'' ([[2zm6]], chain I). | + | [[Ribosomal protein S9]] (RPS9) is one of the 21 proteins which belong to the 30S <scene name='43/433023/Cv/3'>small subunit</scene> of the [http://en.wikipedia.org/wiki/Bacteria bacterial] [[ribosome]] or the 30 proteins which belong to the 40S small subunit of the eukaryotic ribosome<ref>PMID:23285058</ref>. |
| - | | + | |
| - | {{TOC limit|limit=2}}
| + | |
| - | <br /> | + | |
| - | <br /> | + | |
| | <br /> | | <br /> |
| | | | |
| | == 3D Structures of Ribosomal protein S9 == | | == 3D Structures of Ribosomal protein S9 == |
| | | | |
| - | ===S9 in small ribosomal subunit===
| + | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} |
| | | | |
| - | [[2zm6]], [[1n36]], [[1j5e]] - TtRPS5 in 30S ribosomal subunit+THX+16S RRNA – ''Thermus thermophilus''<br />
| + | ===S9 in part of small ribosomal subunit=== |
| - | [[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+RNA fragment<br />
| + | |
| - | [[3kc4]] – EcRPS5 in 30S ribosomal subunit - ''Escherichia coli''<br />
| + | |
| - | [[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]] - EcRPS5 in 30S ribosomal subunit+16S RRNA<br />
| + | |
| - | [[1i94]], [[1fka]] - TtRPS5 in 30S ribosomal subunit+16S RRNA<br />
| + | |
| - | [[1p87]], [[1p6g]] - EcRPS5 in 30S ribosomal subunit+16S RRNA – Cryo-EM<br />
| + | |
| - | [[3bbn]] - RPS5 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach
| + | |
| | | | |
| - | ===S9 in small + large ribosomal subunit===
| + | [[3iy8]] - EcRPS9+EcRPS5+EcRPS6+EcRPS9+EcRPS8 EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS17 + |
| - | | + | EcRPS18 + ''Leishmania taretolae'' mRNA - ''Escherichia coli''<br /> |
| - | [[1ml5]] - EcRPS5 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM | + | [[4v7h]] – RPS9+RPS0+RPS2+RPS3+RPS5+RPS11+RPS13+RPS14+RPS15+RPS16+ |
| - | | + | RPS18+RPS20+RPS22+RPS23+RPS29+18S RRNA+RACK1+S19E+tRNA – Cryo-EM - ''Thermomyces lanuginosus''<br /> |
| - | ===S9 in small ribosomal subunit+ chain release factor===
| + | [[2r1g]] – TtRPS9+TtRPS12+TtRPS13+16S RRNA helices - ''Thermus thermophilus''<br /> |
| - | | + | |
| - | [[3mr8]], [[3ms0]] – TtRPS5 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA <br />
| + | |
| - | [[3d5a]], [[3d5c]] - TtRPS5 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
| + | |
| - | [[2b64]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1<br />
| + | |
| - | [[2b9m]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2<br />
| + | |
| - | [[2x9r]], [[2x9t]], [[2wh1]], [[2wh3]] - TtRPS5 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA<br />
| + | |
| - | [[3f1e]], [[3f1g]] - TtRPS5 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA
| + | |
| - | | + | |
| - | ===S9 in small ribosomal subunit+tRNA+mRNA===
| + | |
| - | | + | |
| - | [[2hgi]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet<br />
| + | |
| - | [[2hgp]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
| + | |
| - | [[2i2p]], [[2i2u]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
| + | |
| - | [[2hgr]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br />
| + | |
| - | [[1yl4]] – TtRPS5 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br />
| + | |
| - | [[1pns]] - EcRPS5 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA <br />
| + | |
| - | [[1xnq]], [[1xnr]] - TtRPS5 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA
| + | |
| - | | + | |
| - | ===S9 in small ribosomal subunit+A-site tRNA===
| + | |
| - | | + | |
| - | [[2uxd]], [[2uxc]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA<br />
| + | |
| - | [[1n32]], [[1n33]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br />
| + | |
| - | [[1n34]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br />
| + | |
| - | [[1xmo]], [[1xmq]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br />
| + | |
| - | [[2uxb]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
| + | |
| - | | + | |
| - | ===S9 in small ribosomal subunit+P-site tRNA===
| + | |
| - | | + | |
| - | [[3i8g]] - TtRPS5 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA<br />
| + | |
| - | [[3i8h]], [[3i9b]], [[3i9d]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br />
| + | |
| - | [[1ibk]] - TtRPS5 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
| + | |
| - | [[2wwl]] - EcRPS5 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - ''Escherichia coli''<br />
| + | |
| - | [[3i1q]] - EcRPS5 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA<br /> | + | |
| - | [[3i1s]], [[3i1z]], [[3i21]] - EcRPS5 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA
| + | |
| - | | + | |
| - | ===S9 in small ribosomal subunit+A-site tRNA+P-site tRNA===
| + | |
| - |
| + | |
| - | [[1ibl]], [[1ibm]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
| + | |
| - | | + | |
| - | ===S9 in small ribosomal subunit+P-site tRNA+E-site tRNA===
| + | |
| - | | + | |
| - | [[2ow8]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA<br />
| + | |
| - | [[2b9o]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA<br />
| + | |
| - | [[2qnh]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
| + | |
| - | [[2wdg]], [[2wdh]], [[2wdk]], [[2wdm]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe
| + | |
| - | | + | |
| - | ===S9 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA===
| + | |
| - | | + | |
| - | [[2gy9]], [[2gyb]] - EcRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM<br />
| + | |
| - | [[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] - TtRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br />
| + | |
| - | [[3e1a]], [[3e1c]] - EcRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA | + | |
| - | | + | |
| - | ===S9 in small ribosomal subunit + antibiotics===
| + | |
| - | | + | |
| - | [[1i95]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+edeine<br />
| + | |
| - | [[1i97]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tetracycline<br />
| + | |
| - | [[1hnw]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+mRNA fragment+tetracycline<br />
| + | |
| - | [[1hnx]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+mRNA fragment+pactamycin <br />
| + | |
| - | [[1hnz]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+mRNA fragment+hygromycin B<br />
| + | |
| - | [[1fjg]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+mRNA fragment+streptomycin<br />
| + | |
| - | [[2qbb]], [[2qb9]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+kasugamyin<br />
| + | |
| - | [[2hhh]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+kasugamyin<br />
| + | |
| - | [[2f4v]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+designed antibiotic<br />
| + | |
| - | [[1vs5]], [[1vs7]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+gentamicin<br />
| + | |
| - | [[2qan]], [[2qal]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+neomycin<br />
| + | |
| - | [[2qou]], [[2qow]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+spectinomycin<br />
| + | |
| - | [[2qoy]], [[2qp0]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+spectinomycin+neomycin<br />
| + | |
| - | [[2z4k]], [[2z4m]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+paromomycin<br />
| + | |
| - | [[2j00]], [[2j02]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br />
| + | |
| - | [[3knj]], [[3knh]] - TtRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin<br />
| + | |
| - | [[3knl]], [[3knn]] - TtRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin
| + | |
| - | | + | |
| - | ===S9 in small ribosomal subunit + ribosome recycling factor===
| + | |
| - | | + | |
| - | [[2qbd]], [[2qbf]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor<br />
| + | |
| - | [[2qbh]], [[2qbj]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin<br />
| + | |
| - | [[2v46]], [[2v48]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet
| + | |
| - | | + | |
| - | | + | |
| - | ===S9 in small ribosomal subunit + elongation factor===
| + | |
| - | | + | |
| - | [[2wri]], [[2wrk]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G<br />
| + | |
| - | [[2wrn]], [[2wrq]] - TtRPS5 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4<br />
| + | |
| - | [[3fic]] - TtRPS5 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A<br />
| + | |
| - | [[3fih]] - EcRPS5 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU<br />
| + | |
| - | [[3huw]], [[3huy]] - TtRPS5 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br />
| + | |
| - | | + | |
| - | ===S9 in small ribosomal subunit + translation initiation factor===
| + | |
| - | | + | |
| - | [[1i96]] - TtRPS5 in 30S ribosomal subunit+THX+IF3+16S RRNA<br />
| + | |
| - | [[1hr0]] - TtRPS5 in 30S ribosomal subunit+THX+IF+16S RRNA
| + | |
| - | | + | |
| - | ===S9 in small ribosomal subunit + various proteins===
| + | |
| - | | + | |
| - | [[3kiq]], [[3kis]], [[3kiu]], [[3kix]] - TtRPS5 in 30S ribosomal subunit+toxin RelE+16S RRNA<br />
| + | |
| - | [[1voq]], [[1vos]], [[1vov]], [[1vox]], [[1voz]] - EcRPS5 in 30S ribosomal subunit+protein Y+16S RRNA<br />
| + | |
| - | | + | |
| - | ===S9 in part of small ribosomal subunit===
| + | |
| | | | |
| - | [[3iy8]] - EcRPS8+EcRPS5+EcRPS6+EcRPS9+EcRPS9 EcRPS11+EcRPS12+EcRPS15+EcRPS16+EcRPS17+EcRPS18+''Leishmania taretolae'' mRNA<br />
| + | == References == |
| - | [[3jyv]] – RPS9+RPS0+RPS2+RPS3+RPS5+RPS11+RPS13+RPS14+RPS15+RPS16+RPS18+RPS20+RPS22+RPS23+RPS29+18S RRNA+RACK1+S19E+tRNA – Cryo-EM - ''Thermomyces lanuginosus''<br />
| + | <references/> |
| - | [[2r1g]] – TtRPS9+TtRPS12+TtRPS13+16S RRNA helices
| + | </StructureSection> |
| | | | |
| | [[Category:Topic Page]] | | [[Category:Topic Page]] |
