Ribosomal protein S16

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(New page: Crystal Structure of Ribosomal protein S16 from 2zm6, chain P {{STRUCTURE_2zm6| PDB=2zm6 | SIZE=300| SCENE= |right|CAPTION=Ribosomal protein S16 ...)
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[[Image:RPS16.png|left|200px|thumb|Crystal Structure of Ribosomal protein S16 from [[2zm6]], chain P]]
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<StructureSection load='3bn0' size='350' side='right' scene='' caption='Ribosomal protein S16 complex with glycerol (PDB code [[3bn0]])'>
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{{STRUCTURE_2zm6| PDB=2zm6 | SIZE=300| SCENE= |right|CAPTION=Ribosomal protein S16 from [[2zm6]], chain P }}
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[[Ribosomal protein S16]] (RPS16) is one of the 21 proteins which belong to the 30S <scene name='Ribosomal_protein_S16/Cv/2'>small subunit</scene> of the [http://en.wikipedia.org/wiki/Bacteria bacterial] [[ribosome]] or the 30 proteins which belong to the 40S small subunit of the eukaryotic ribosome. It exhibits endonuclease activity<ref>PMID:8730873</ref>.
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</StructureSection>
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== 3D Structures of Ribosomal protein S16 ==
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[[Ribosomal protein S16]] (RPS16) is one of the 22 proteins which belong to the small subunit of the ribosome. It exhibits endonuclease activity. The images at the left and at the right correspond to one representative RPS16, ''i.e.'' the crystal structure of Ribosomal protein S16 from ''Thermus thermophilus'' ([[2zm6]], chain P).
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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
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{{#tree:id=OrganizedByTopic|openlevels=0|
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{{TOC limit|limit=2}}
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*Ribosomal protein S16
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== 3D Structures of Ribosomal protein S14 ==
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**[[3bn0]] – RPS16 – ''Aquifex aeolicus''<br />
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**[[1emw]] – TtRPS16 – NMR - ''Thermus thermophilus''
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===S16 in small ribosomal subunit===
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*Ribosomal protein S16 in part of small ribosomal subunit
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[[2zm6]], [[1n36]], [[1j5e]], [[3oto]] - TtRPS5 in 30S ribosomal subunit+THX+16S RRNA – ''Thermus thermophilus''<br />
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[[2vqe]], [[2vqf]], [[2uuc]], [[2e5l]], [[2uu9]], [[2uua]], [[2uub]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+RNA fragment<br />
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[[3kc4]] – EcRPS5 in 30S ribosomal subunit - ''Escherichia coli''<br />
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[[3i1m]], [[3i1o]], [[3df1]], [[3df3]], [[2vho]], [[2vhp]], [[2avy]], [[2aw7]], [[1pnx]] - EcRPS5 in 30S ribosomal subunit+16S RRNA<br />
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[[1i94]], [[1fka]] - TtRPS5 in 30S ribosomal subunit+16S RRNA<br />
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[[1p87]], [[1p6g]] - EcRPS5 in 30S ribosomal subunit+16S RRNA – Cryo-EM<br />
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[[3bbn]] - RPS5 in 30S ribosomal subunit+16S RRNA – Cryo-EM – spinach
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===S16 in small + large ribosomal subunit===
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[[1ml5]] - EcRPS5 in 30S ribosomal subunit+50S ribosomal subunit+THX+chain release factor 2+P-site tRNA+tRNA Phe+mRNA fragment+23S RRNA+5S RRNA+16S RRNA - EM
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===S16 in small ribosomal subunit+ chain release factor===
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[[3mr8]], [[3ms0]] – TtRPS5 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+mRNA+16S RRNA <br />
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[[3d5a]], [[3d5c]] - TtRPS5 in 30S ribosomal subunit+THX+chain release factor 1+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
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[[2b64]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 1<br />
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[[2b9m]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA+chain release factor 2<br />
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[[2x9r]], [[2x9t]], [[2wh1]], [[2wh3]] - TtRPS5 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+mRNA +16S RRNA<br />
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[[3f1e]], [[3f1g]] - TtRPS5 in 30S ribosomal subunit+THX+chain release factor 2+P-site tRNA+E-site tRNA +16S RRNA
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===S16 in small ribosomal subunit+tRNA+mRNA===
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[[2hgi]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet<br />
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[[2hgp]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
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[[2i2p]], [[2i2u]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+mRNA<br />
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[[2hgr]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tRNA Phe+tRNA fMet+mRNA<br />
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[[1yl4]] – TtRPS5 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+THRS mRNA operator<br />
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[[1pns]] - EcRPS5 in 30S ribosomal subunit+ tRNA Phe+16S RRNA+mRNA <br />
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[[1xnq]], [[1xnr]] - TtRPS5 in 30S ribosomal subunit+THX+mRNA+tRNA anticodon+16S RRNA
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===S16 in small ribosomal subunit+A-site tRNA===
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[[2uxd]], [[2uxc]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA CGGG+tRNA anticodon+16S RRNA<br />
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[[1n32]], [[1n33]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA fragment+tRNA anticodon+16S RRNA<br />
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[[1n34]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA fragment +16S RRNA<br />
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[[1xmo]], [[1xmq]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA+tRNA anticodon+16S RRNA<br />
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[[2uxb]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA GGGU+tRNA anticodon+16S RRNA
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===S16 in small ribosomal subunit+P-site tRNA===
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[[3i8g]] - TtRPS5 in 30S ribosomal subunit+P-site tRNA+mRNA +16S RRNA<br />
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[[3i8h]], [[3i9b]], [[3i9d]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA<br />
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[[1ibk]] - TtRPS5 in 30S ribosomal subunit+THX+P-site mRNA fragment +16S RRNA<br />
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[[2wwl]] - EcRPS5 in 30S ribosomal subunit+Poly-Ala chain+P-site tRNA+mRNA +16S RRNA - ''Escherichia coli''<br />
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[[3i1q]] - EcRPS5 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA<br />
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[[3i1s]], [[3i1z]], [[3i21]] - EcRPS5 in 30S ribosomal subunit+P-site tRNA hairpin+mRNA +16S RNA
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===S16 in small ribosomal subunit+A-site tRNA+P-site tRNA===
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[[1ibl]], [[1ibm]] - TtRPS5 in 30S ribosomal subunit+THX+A-site mRNA fragment+P-site mRNA fragment+tRNA anticodon+16S RRNA
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===S16 in small ribosomal subunit+P-site tRNA+E-site tRNA===
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[[2ow8]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA+mRNA +16S RRNA<br />
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[[2b9o]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA Phe+E-site tRNA Phe+mRNA +16S RRNA<br />
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[[2qnh]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA<br />
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===S16 in small ribosomal subunit+A-site tRNA+P-site tRNA+E-site tRNA===
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[[2gy9]], [[2gyb]] - EcRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA – Cryo-EM<br />
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[[1jgo]], [[1jgp]], [[1jgq]], [[1gix]] - TtRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+tRNA Phe+mRNA +16S RRNA<br />
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[[3e1a]], [[3e1c]] - EcRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA
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===S16 in small ribosomal subunit + antibiotics===
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[[1i95]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+edeine<br />
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[[1i97]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+tetracycline<br />
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[[1hnw]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+mRNA fragment+tetracycline<br />
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[[1hnx]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+mRNA fragment+pactamycin <br />
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[[1hnz]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+mRNA fragment+hygromycin B<br />
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[[1fjg]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+mRNA fragment+streptomycin<br />
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[[2qbb]], [[2qb9]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+kasugamyin<br />
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[[2hhh]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+kasugamyin<br />
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[[2f4v]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+designed antibiotic<br />
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[[1vs5]], [[1vs7]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+gentamicin<br />
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[[2qan]], [[2qal]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+neomycin<br />
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[[2qou]], [[2qow]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+spectinomycin<br />
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[[2qoy]], [[2qp0]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+spectinomycin+neomycin<br />
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[[2z4k]], [[2z4m]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+paromomycin<br />
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[[2j00]], [[2j02]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+paromomycin+P-site tRNA fMet+E-site tRNA Phe+mRNA<br />
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[[2wdg]], [[2wdh]], [[2wdk]], [[2wdm]] - TtRPS14 in 30S ribosomal subunit+THX+P-site tRNA+E-site tRNA+mRNA +16S RRNA+tRNA Phe+paromomycin<br />
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[[3knj]], [[3knh]] - TtRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+viomycin<br />
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[[3knl]], [[3knn]] - TtRPS5 in 30S ribosomal subunit+P-site tRNA+A-site tRNA+E-site tRNA+mRNA +16S RRNA+capreomycin
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===S16 in small ribosomal subunit + ribosome recycling factor===
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[[2qbd]], [[2qbf]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor<br />
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[[2qbh]], [[2qbj]] - EcRPS5 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+gentamicin<br />
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[[2v46]], [[2v48]] - TtRPS5 in 30S ribosomal subunit+16S RRNA+ribosome recycling factor+P-site tRNA Phe+mRNA+tRNA fMet
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===S16 in small ribosomal subunit + elongation factor===
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[[2wri]], [[2wrk]] - TtRPS5 in 30S ribosomal subunit+THX+P-site tRNA+mRNA +16S RRNA+elongation factor G<br />
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[[2wrn]], [[2wrq]] - TtRPS5 in 30S ribosomal subunit+THX+A-site tRNA+mRNA +16S RRNA+elongation factor TU-4<br />
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[[3fic]] - TtRPS5 in 30S ribosomal subunit+THX+A-site tRNA+P-site tRNA+E-site tRNA+mRNA codon+16S RRNA+elongation factor TU-A<br />
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[[3fih]] - EcRPS5 in 30S ribosomal subunit+A-site tRNA Phe+P-site tRNA+mRNA +16S RRNA+elongation factor TU<br />
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[[3huw]], [[3huy]] - TtRPS5 in 30S ribosomal subunit+THX+tRNA-Met+mRNA +16S RRNA+elongation factor P<br />
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===S16 in small ribosomal subunit + translation initiation factor===
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[[1i96]] - TtRPS5 in 30S ribosomal subunit+THX+IF3+16S RRNA<br />
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[[1hr0]] - TtRPS5 in 30S ribosomal subunit+THX+IF+16S RRNA
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===S16 in small ribosomal subunit + various proteins===
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[[3kiq]], [[3kis]], [[3kiu]], [[3kix]] - TtRPS5 in 30S ribosomal subunit+toxin RelE+16S RRNA<br />
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[[1voq]], [[1vos]], [[1vov]], [[1vox]], [[1voz]] - EcRPS5 in 30S ribosomal subunit+protein Y+16S RRNA<br />
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[[2xfz]], [[2xg1]] - TtRPS14 in 30S ribosomal subunit+tRNA Phe+mRNA+colicin E3+16S RRNA<br />
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[[3jyv]] - RPS14+RPS0+RPS2+RPS3+RPS5+RPS9+RPS11+RPS13+RPS15+RPS16+RPS18+RPS20+RPS22+RPS23+RPS29+18S RRNA+RACK1+S19E+tRNA – Cryo-EM - ''Thermomyces lanuginosus''<br />
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[[2zkq]] – RPS14 in 40S ribosomal subunit+RNA fragments+RACK1+18S RRNA
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**[[3iy8]] – EcRPS16+EcRPS5+EcRPS6+EcRPS8+EcRPS9+ EcRPS11+EcRPS12+EcRPS15+EcRPS17+EcRPS18+''Leishmania taretolae'' mRNA - ''Escherichia coli''
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}}
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== References ==
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<references/>
[[Category:Topic Page]]
[[Category:Topic Page]]

Current revision

Ribosomal protein S16 complex with glycerol (PDB code 3bn0)

Drag the structure with the mouse to rotate

3D Structures of Ribosomal protein S16

Updated on 01-October-2017

References

  1. ↑ Oberto J, Bonnefoy E, Mouray E, Pellegrini O, Wikstrom PM, Rouviere-Yaniv J. The Escherichia coli ribosomal protein S16 is an endonuclease. Mol Microbiol. 1996 Mar;19(6):1319-30. PMID:8730873

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky, Joel L. Sussman

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