2ko2

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[[Image:2ko2.png|left|200px]]
 
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==NOGO66==
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The line below this paragraph, containing "STRUCTURE_2ko2", creates the "Structure Box" on the page.
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<StructureSection load='2ko2' size='340' side='right'caption='[[2ko2]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2ko2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KO2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KO2 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ko2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ko2 OCA], [https://pdbe.org/2ko2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ko2 RCSB], [https://www.ebi.ac.uk/pdbsum/2ko2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ko2 ProSAT]</span></td></tr>
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{{STRUCTURE_2ko2| PDB=2ko2 | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/RTN4_MOUSE RTN4_MOUSE] Developmental neurite growth regulatory factor with a role as a negative regulator of axon-axon adhesion and growth, and as a facilitator of neurite branching. Regulates neurite fasciculation, branching and extension in the developing nervous system. Involved in down-regulation of growth, stabilization of wiring and restriction of plasticity in the adult CNS. Regulates the radial migration of cortical neurons via an RTN4R-LINGO1 containing receptor complex. May inhibit BACE1 activity and amyloid precursor protein processing.<ref>PMID:20093372</ref> <ref>PMID:20573699</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ko/2ko2_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ko2 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Repair of damage to the central nervous system (CNS) is inhibited by the presence of myelin proteins that prevent axonal regrowth. Consequently, growth inhibitors and their common receptor have been identified as targets in the treatment of injury to the CNS. Here we describe the structure of the extracellular domain of the neurite outgrowth inhibitor (Nogo) in a membrane-like environment. Isoforms of Nogo are expressed with a common C terminus containing two transmembrane (TM) helices. The ectodomain between the two TM helices, Nogo-66, is active in preventing axonal growth [GrandPre T, Nakamura F, Vartanian T, Strittmatter SM (2000) Nature 403:439-444]. We studied the structure of Nogo-66 alone and in the presence of 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) vesicles and dodecylphosphocholine (DPC) micelles as membrane mimetics. We find that Nogo-66 is largely disordered when free in solution. However, when bound to a phosphocholine surface Nogo-66 adopts a unique, stable fold, even in the absence of TM anchors. Using paramagnetic probes and protein-DPC nuclear Overhauser effects (NOEs), we define portions of the growth inhibitor likely to be accessible on the cell surface. With these data we predict that residues (28-58) are available to bind the Nogo receptor, which is entirely consistent with functional assays. Moreover, the conformations and relative positions of side chains recognized by the receptor are now defined and provide a foundation for antagonist design.
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===NOGO66===
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Protein folding at the membrane interface, the structure of Nogo-66 requires interactions with a phosphocholine surface.,Vasudevan SV, Schulz J, Zhou C, Cocco MJ Proc Natl Acad Sci U S A. 2010 Apr 13;107(15):6847-51. Epub 2010 Mar 29. PMID:20351248<ref>PMID:20351248</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_20351248}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2ko2" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 20351248 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_20351248}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[2ko2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KO2 OCA].
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==Reference==
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<ref group="xtra">PMID:20351248</ref><references group="xtra"/>
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[[Category: Mus musculus]]
[[Category: Mus musculus]]
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[[Category: Cocco, M J.]]
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[[Category: Cocco MJ]]
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[[Category: Schulz, J.]]
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[[Category: Schulz J]]
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[[Category: Vasudevan, S V.]]
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[[Category: Vasudevan SV]]
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[[Category: Dpc micelle]]
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[[Category: Endoplasmic reticulum]]
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[[Category: Membrane]]
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[[Category: Membrane protein]]
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[[Category: Myelin inhibitor]]
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[[Category: Nogo]]
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[[Category: Peripheral]]
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[[Category: Phosphoprotein]]
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[[Category: Transmembrane]]
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Current revision

NOGO66

PDB ID 2ko2

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