2d5l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2d5l" [edit=sysop:move=sysop])
Current revision (13:46, 13 March 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2d5l.png|left|200px]]
 
-
<!--
+
==Crystal Structure of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis==
-
The line below this paragraph, containing "STRUCTURE_2d5l", creates the "Structure Box" on the page.
+
<StructureSection load='2d5l' size='340' side='right'caption='[[2d5l]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2d5l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porphyromonas_gingivalis_W83 Porphyromonas gingivalis W83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D5L FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_2d5l| PDB=2d5l | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5l OCA], [https://pdbe.org/2d5l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5l RCSB], [https://www.ebi.ac.uk/pdbsum/2d5l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5l ProSAT]</span></td></tr>
-
 
+
</table>
-
===Crystal Structure of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/PTP_PORGI PTP_PORGI] Serine proteinase. Releases tripeptides from the free amino terminus of proteins. Has a requirement for Pro in the P1 position, but is inactivated by Pro in the P1' position.<ref>PMID:10092598</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_16914159}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 16914159 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d5l_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_16914159}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[2d5l]] is a 1 chain structure of [[Tripeptidyl peptidase]] with sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis_w83 Porphyromonas gingivalis w83]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5L OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d5l ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Tripeptidyl peptidase]]
+
*[[Tripeptidyl peptidase|Tripeptidyl peptidase]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:16914159</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Porphyromonas gingivalis w83]]
+
</StructureSection>
-
[[Category: Ito, K.]]
+
[[Category: Large Structures]]
-
[[Category: Nakajima, Y.]]
+
[[Category: Porphyromonas gingivalis W83]]
-
[[Category: Onohara, Y.]]
+
[[Category: Ito K]]
-
[[Category: Xu, Y.]]
+
[[Category: Nakajima Y]]
-
[[Category: Yamada, N.]]
+
[[Category: Onohara Y]]
-
[[Category: Yoshimoto, T.]]
+
[[Category: Xu Y]]
-
[[Category: Hydrolase]]
+
[[Category: Yamada N]]
-
[[Category: Peptidase family s9]]
+
[[Category: Yoshimoto T]]
-
[[Category: Prolyl oligopeptidase family]]
+
-
[[Category: Serine peptidase]]
+

Current revision

Crystal Structure of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis

PDB ID 2d5l

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2d5l"
Personal tools