This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1jqp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:53, 3 April 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1jqp.png|left|200px]]
 
-
<!--
+
==dipeptidyl peptidase I (cathepsin C), a tetrameric cysteine protease of the papain family==
-
The line below this paragraph, containing "STRUCTURE_1jqp", creates the "Structure Box" on the page.
+
<StructureSection load='1jqp' size='340' side='right'caption='[[1jqp]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1jqp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JQP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1JQP FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
{{STRUCTURE_1jqp| PDB=1jqp | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1jqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1jqp OCA], [https://pdbe.org/1jqp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1jqp RCSB], [https://www.ebi.ac.uk/pdbsum/1jqp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1jqp ProSAT]</span></td></tr>
-
 
+
</table>
-
===dipeptidyl peptidase I (cathepsin C), a tetrameric cysteine protease of the papain family===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/CATC_RAT CATC_RAT] Thiol protease. Has dipeptidylpeptidase activity. Can act as both an exopeptidase and endopeptidase (By similarity).
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_11602245}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 11602245 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jq/1jqp_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_11602245}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[1jqp]] is a 1 chain structure of [[Cathepsin]] and [[Dipeptidyl peptidase]] with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1JQP OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1jqp ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Cathepsin]]
+
*[[Cathepsin 3D structures|Cathepsin 3D structures]]
-
*[[Dipeptidyl peptidase]]
+
__TOC__
-
 
+
</StructureSection>
-
==Reference==
+
[[Category: Large Structures]]
-
<ref group="xtra">PMID:11602245</ref><references group="xtra"/>
+
-
[[Category: Dipeptidyl-peptidase I]]
+
[[Category: Rattus norvegicus]]
[[Category: Rattus norvegicus]]
-
[[Category: Dahl, S W.]]
+
[[Category: Dahl SW]]
-
[[Category: Kadziola, A.]]
+
[[Category: Kadziola A]]
-
[[Category: Larsen, S.]]
+
[[Category: Larsen S]]
-
[[Category: Lauritzen, C.]]
+
[[Category: Lauritzen C]]
-
[[Category: Olsen, J G.]]
+
[[Category: Olsen JG]]
-
[[Category: Pedersen, J.]]
+
[[Category: Pedersen J]]
-
[[Category: Cathepsin c]]
+
-
[[Category: Chloride]]
+
-
[[Category: Cysteine protease]]
+
-
[[Category: Dpp i]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Papain]]
+
-
[[Category: Tetramer]]
+

Current revision

dipeptidyl peptidase I (cathepsin C), a tetrameric cysteine protease of the papain family

PDB ID 1jqp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1jqp"
Personal tools