This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3jyh

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:26, 26 December 2018) (edit) (undo)
 
(6 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3jyh.png|left|200px]]
 
-
<!--
+
==Human dipeptidyl peptidase DPP7==
-
The line below this paragraph, containing "STRUCTURE_3jyh", creates the "Structure Box" on the page.
+
<StructureSection load='3jyh' size='340' side='right' caption='[[3jyh]], [[Resolution|resolution]] 2.19&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3jyh]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JYH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JYH FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-
-->
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DPP2, DPP7, QPP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
-
{{STRUCTURE_3jyh| PDB=3jyh | SCENE= }}
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dipeptidyl-peptidase_II Dipeptidyl-peptidase II], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.14.2 3.4.14.2] </span></td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3jyh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jyh OCA], [http://pdbe.org/3jyh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3jyh RCSB], [http://www.ebi.ac.uk/pdbsum/3jyh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3jyh ProSAT]</span></td></tr>
-
===Human dipeptidyl peptidase DPP7===
+
</table>
-
 
+
== Function ==
-
 
+
[[http://www.uniprot.org/uniprot/DPP2_HUMAN DPP2_HUMAN]] Plays an important role in the degradation of some oligopeptides.<ref>PMID:15487984</ref>
-
==About this Structure==
+
== Evolutionary Conservation ==
-
[[3jyh]] is a 4 chain structure of [[Dipeptidyl peptidase]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JYH OCA].
+
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jy/3jyh_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3jyh ConSurf].
 +
<div style="clear:both"></div>
==See Also==
==See Also==
-
*[[Dipeptidyl peptidase]]
+
*[[Dipeptidyl peptidase|Dipeptidyl peptidase]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
[[Category: Dipeptidyl-peptidase II]]
[[Category: Dipeptidyl-peptidase II]]
-
[[Category: Homo sapiens]]
+
[[Category: Human]]
-
[[Category: Arrowsmith, C H.]]
+
[[Category: Arrowsmith, C H]]
-
[[Category: Bochkarev, A.]]
+
[[Category: Bochkarev, A]]
-
[[Category: Bountra, C.]]
+
[[Category: Bountra, C]]
-
[[Category: Cossar, D.]]
+
[[Category: Cossar, D]]
-
[[Category: Crombett, L.]]
+
[[Category: Crombett, L]]
-
[[Category: Dobrovetsky, E.]]
+
[[Category: Dobrovetsky, E]]
-
[[Category: Dong, A.]]
+
[[Category: Dong, A]]
-
[[Category: Edwards, A M.]]
+
[[Category: Edwards, A M]]
-
[[Category: Hassel, A.]]
+
[[Category: Hassel, A]]
-
[[Category: Paganon, S.]]
+
[[Category: Paganon, S]]
-
[[Category: SGC, Structural Genomics Consortium.]]
+
[[Category: Structural genomic]]
-
[[Category: Seitova, A.]]
+
[[Category: Seitova, A]]
-
[[Category: Shewchuk, L.]]
+
[[Category: Shewchuk, L]]
-
[[Category: Weigelt, J.]]
+
[[Category: Weigelt, J]]
[[Category: Aminopeptidase]]
[[Category: Aminopeptidase]]
[[Category: Cleavage on pair of basic residue]]
[[Category: Cleavage on pair of basic residue]]
Line 39: Line 50:
[[Category: Hydrolase]]
[[Category: Hydrolase]]
[[Category: Lysosome]]
[[Category: Lysosome]]
-
[[Category: Polymorphism]]
 
[[Category: Protease]]
[[Category: Protease]]
[[Category: Serine protease]]
[[Category: Serine protease]]
[[Category: Sgc]]
[[Category: Sgc]]
-
[[Category: Structural genomic]]
 
-
[[Category: Structural genomics consortium]]
 
[[Category: Zymogen]]
[[Category: Zymogen]]

Current revision

Human dipeptidyl peptidase DPP7

3jyh, resolution 2.19Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3jyh"
Personal tools