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3pgd
From Proteopedia
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| - | [[Image:3pgd.png|left|200px]] | ||
| - | + | ==Crystal Structure of HLA-DR1 with CLIP106-120, canonical peptide orientation== | |
| - | + | <StructureSection load='3pgd' size='340' side='right'caption='[[3pgd]], [[Resolution|resolution]] 2.72Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3pgd]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PGD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PGD FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.72Å</td></tr> | |
| - | -- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pgd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pgd OCA], [https://pdbe.org/3pgd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pgd RCSB], [https://www.ebi.ac.uk/pdbsum/3pgd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pgd ProSAT]</span></td></tr> |
| - | + | </table> | |
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | T-cell recognition of peptides bound to MHC class II (MHCII) molecules is a central event in cell-mediated adaptive immunity. The current paradigm holds that prebound class II-associated invariant chain peptides (CLIP) and all subsequent antigens maintain a canonical orientation in the MHCII binding groove. Here we provide evidence for MHCII-bound CLIP inversion. NMR spectroscopy demonstrates that the interconversion from the canonical to the inverse alignment is a dynamic process, and X-ray crystallography shows that conserved MHC residues form a hydrogen bond network with the peptide backbone in both orientations. The natural catalyst HLA-DM accelerates peptide reorientation and the exchange of either canonically or inversely bound CLIP against antigenic peptide. Thus, noncanonical MHC-CLIP displays the hallmarks of a structurally and functionally intact antigen-presenting complex. | ||
| - | + | Bidirectional binding of invariant chain peptides to an MHC class II molecule.,Gunther S, Schlundt A, Sticht J, Roske Y, Heinemann U, Wiesmuller KH, Jung G, Falk K, Rotzschke O, Freund C Proc Natl Acad Sci U S A. 2010 Nov 29. PMID:21115828<ref>PMID:21115828</ref> | |
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 3pgd" style="background-color:#fffaf0;"></div> | ||
| - | + | ==See Also== | |
| - | + | *[[MHC 3D structures|MHC 3D structures]] | |
| - | + | *[[MHC II 3D structures|MHC II 3D structures]] | |
| - | + | == References == | |
| - | + | <references/> | |
| - | + | __TOC__ | |
| - | == | + | </StructureSection> |
| - | [[ | + | |
| - | + | ||
| - | == | + | |
| - | < | + | |
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
| - | [[Category: Falk | + | [[Category: Large Structures]] |
| - | [[Category: Freund | + | [[Category: Falk K]] |
| - | [[Category: Gunther | + | [[Category: Freund C]] |
| - | [[Category: Heinemann | + | [[Category: Gunther S]] |
| - | [[Category: Jung | + | [[Category: Heinemann U]] |
| - | [[Category: Roske | + | [[Category: Jung G]] |
| - | [[Category: Rotzschke | + | [[Category: Roske Y]] |
| - | [[Category: Schlundt | + | [[Category: Rotzschke O]] |
| - | [[Category: Sticht | + | [[Category: Schlundt A]] |
| - | [[Category: Wiesmuller | + | [[Category: Sticht J]] |
| + | [[Category: Wiesmuller K-H]] | ||
Current revision
Crystal Structure of HLA-DR1 with CLIP106-120, canonical peptide orientation
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Categories: Homo sapiens | Large Structures | Falk K | Freund C | Gunther S | Heinemann U | Jung G | Roske Y | Rotzschke O | Schlundt A | Sticht J | Wiesmuller K-H
