2kk9

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[[Image:2kk9.png|left|200px]]
 
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==Anti-group A streptococcal vaccine epitope: structure, stability and its ability to interact with HLA class II molecules==
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The line below this paragraph, containing "STRUCTURE_2kk9", creates the "Structure Box" on the page.
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<StructureSection load='2kk9' size='340' side='right'caption='[[2kk9]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2kk9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pyogenes_serotype_M5 Streptococcus pyogenes serotype M5]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KK9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KK9 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 1 model</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
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{{STRUCTURE_2kk9| PDB=2kk9 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kk9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kk9 OCA], [https://pdbe.org/2kk9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kk9 RCSB], [https://www.ebi.ac.uk/pdbsum/2kk9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kk9 ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/2kk9_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kk9 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Streptococcus pyogenes infections remain a health problem in several countries due to post-streptococcal sequelae. We developed a vaccine epitope (StreptInCor) composed of 55 amino acids residues of the C-terminal portion of the M protein that encompasses both T and B cell protective epitopes. The nuclear magnetic resonance (NMR) structure of the StreptInCor peptide showed that the structure was composed of two microdomains linked by an 18-residue alpha-helix. A chemical stability study of the StreptInCor folding/unfolding process using far-UV circular dichroism showed that the structure was chemically stable with respect to pH and the concentration of urea. The T cell epitope is located in the first microdomain and encompasses 11 out of the 18 alpha-helix residues, whereas the B cell epitope is in the second microdomain and showed no alpha-helical structure. The prediction of StreptInCor epitope binding to different HLA class II molecules was evaluated based on an analysis of the 55 residues and the theoretical possibilities for the processed peptides to fit into the P1, P4, P6 and P9 pockets in the groove of several HLA class II molecules. We observed 7 potential sites along the amino acid sequence of StreptInCor that were capable of recognizing HLA class II molecules (DRB1*, DRB3*, DRB4*, and DRB5*). StreptInCor overlapping peptides induced cellular and humoral immune responses of individuals bearing different HLA class II molecules and could be considered as a universal vaccine epitope.
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===Anti-group A streptococcal vaccine epitope: structure, stability and its ability to interact with HLA class II molecules===
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Anti-group A streptococcal vaccine epitope: structure,stability and its ability to interact with HLA class II molecules.,Guilherme L, Alba MP, Ferreira FM, Oshiro SE, Higa F, Patarroyo ME, Kalil J J Biol Chem. 2010 Dec 17. PMID:21169359<ref>PMID:21169359</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_21169359}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2kk9" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 21169359 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_21169359}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[2kk9]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KK9 OCA].
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[[Category: Streptococcus pyogenes serotype M5]]
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[[Category: Alba MP]]
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==Reference==
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[[Category: Guilherme L]]
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<ref group="xtra">PMID:21169359</ref><references group="xtra"/>
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[[Category: Kalil J]]
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[[Category: Alba, M P.]]
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[[Category: Patarroyo ME]]
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[[Category: Guilherme, L.]]
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[[Category: Kalil, J.]]
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[[Category: Patarroyo, M E.]]
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Current revision

Anti-group A streptococcal vaccine epitope: structure, stability and its ability to interact with HLA class II molecules

PDB ID 2kk9

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