3hz3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:27, 20 March 2024) (edit) (undo)
 
(5 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3hz3.png|left|200px]]
 
-
<!--
+
==Lactobacillus reuteri N-terminally truncated glucansucrase GTF180(D1025N)-sucrose complex==
-
The line below this paragraph, containing "STRUCTURE_3hz3", creates the "Structure Box" on the page.
+
<StructureSection load='3hz3' size='340' side='right'caption='[[3hz3]], [[Resolution|resolution]] 2.22&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3hz3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Limosilactobacillus_reuteri Limosilactobacillus reuteri]. The June 2011 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Glucansucrase'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2011_6 10.2210/rcsb_pdb/mom_2011_6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HZ3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HZ3 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.22&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene></td></tr>
-
{{STRUCTURE_3hz3| PDB=3hz3 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hz3 OCA], [https://pdbe.org/3hz3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hz3 RCSB], [https://www.ebi.ac.uk/pdbsum/3hz3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hz3 ProSAT]</span></td></tr>
-
 
+
</table>
-
===Lactobacillus reuteri N-terminally truncated glucansucrase GTF180(D1025N)-sucrose complex===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q5SBN3_LIMRT Q5SBN3_LIMRT] Production of extracellular glucans, that are thought to play a key role in the development of the dental plaque because of their ability to adhere to smooth surfaces and mediate the aggregation of bacterial cells and food debris.[ARBA:ARBA00003243]
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_21118988}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 21118988 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hz/3hz3_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_21118988}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
[[3hz3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactobacillus_reuteri Lactobacillus reuteri]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HZ3 OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3hz3 ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
__TOC__
-
<ref group="xtra">PMID:21118988</ref><references group="xtra"/>
+
</StructureSection>
-
[[Category: Dextransucrase]]
+
[[Category: Glucansucrase]]
-
[[Category: Lactobacillus reuteri]]
+
[[Category: Large Structures]]
-
[[Category: Dijkhuizen, L.]]
+
[[Category: Limosilactobacillus reuteri]]
-
[[Category: Dijkstra, B W.]]
+
[[Category: RCSB PDB Molecule of the Month]]
-
[[Category: Eeuwema, W.]]
+
[[Category: Dijkhuizen L]]
-
[[Category: Kralj, S.]]
+
[[Category: Dijkstra BW]]
-
[[Category: Pijning, T.]]
+
[[Category: Eeuwema W]]
-
[[Category: Vujicic-Zagar, A.]]
+
[[Category: Kralj S]]
 +
[[Category: Pijning T]]
 +
[[Category: Vujicic-Zagar A]]

Current revision

Lactobacillus reuteri N-terminally truncated glucansucrase GTF180(D1025N)-sucrose complex

PDB ID 3hz3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3hz3"
Personal tools