1ehz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1ehz" [edit=sysop:move=sysop])
Current revision (09:37, 21 December 2022) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ehz.png|left|200px]]
 
-
<!--
+
==The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution==
-
The line below this paragraph, containing "STRUCTURE_1ehz", creates the "Structure Box" on the page.
+
<StructureSection load='1ehz' size='340' side='right'caption='[[1ehz]], [[Resolution|resolution]] 1.93&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ehz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EHZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EHZ FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1MA:6-HYDRO-1-METHYLADENOSINE-5-MONOPHOSPHATE'>1MA</scene>, <scene name='pdbligand=2MG:2N-METHYLGUANOSINE-5-MONOPHOSPHATE'>2MG</scene>, <scene name='pdbligand=5MC:5-METHYLCYTIDINE-5-MONOPHOSPHATE'>5MC</scene>, <scene name='pdbligand=5MU:5-METHYLURIDINE+5-MONOPHOSPHATE'>5MU</scene>, <scene name='pdbligand=7MG:7N-METHYL-8-HYDROGUANOSINE-5-MONOPHOSPHATE'>7MG</scene>, <scene name='pdbligand=H2U:5,6-DIHYDROURIDINE-5-MONOPHOSPHATE'>H2U</scene>, <scene name='pdbligand=M2G:N2-DIMETHYLGUANOSINE-5-MONOPHOSPHATE'>M2G</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=OMC:O2-METHYLYCYTIDINE-5-MONOPHOSPHATE'>OMC</scene>, <scene name='pdbligand=OMG:O2-METHYLGUANOSINE-5-MONOPHOSPHATE'>OMG</scene>, <scene name='pdbligand=PSU:PSEUDOURIDINE-5-MONOPHOSPHATE'>PSU</scene>, <scene name='pdbligand=YYG:4-(3-[5-O-PHOSPHONORIBOFURANOSYL]-4,6-DIMETHYL-8-OXO-4,8-DIHYDRO-3H-1,3,4,5,7A-PENTAAZA-S-INDACEN-YLAMINO-BUTYRIC+ACID+METHYL+ESTER'>YYG</scene></td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ehz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ehz OCA], [https://pdbe.org/1ehz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ehz RCSB], [https://www.ebi.ac.uk/pdbsum/1ehz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ehz ProSAT]</span></td></tr>
-
{{STRUCTURE_1ehz| PDB=1ehz | SCENE= }}
+
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The crystal structure of the monoclinic form of yeast phenylalanine tRNA has been redetermined at a resolution of 1.93 A. The structure of yeast tRNAphe described here is more accurate than its predecessors not only because it incorporates higher resolution data, but also because it has been refined using techniques that had not been developed when its predecessors were determined more than 20 years ago. The 1.93 A resolution version of this structure differs interestingly from its predecessors in its details. In loop regions particularly, the backbone torsion angles in the new structure are not the same as those reported earlier. Several new divalent cation binding sites have been identified, and the water structure that has emerged is also different.
-
===The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution===
+
The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited.,Shi H, Moore PB RNA. 2000 Aug;6(8):1091-105. PMID:10943889<ref>PMID:10943889</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_10943889}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 1ehz" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 10943889 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_10943889}}
+
-
 
+
-
==About this Structure==
+
-
[[1ehz]] is a 1 chain structure of [[TRNA]]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EHZ OCA].
+
==See Also==
==See Also==
-
*[[TRNA]]
+
*[[Transfer RNA (tRNA)|Transfer RNA (tRNA)]]
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:10943889</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Moore, P B.]]
+
</StructureSection>
-
[[Category: Shi, H.]]
+
[[Category: Large Structures]]
-
[[Category: Phenylalanine]]
+
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Trna]]
+
[[Category: Moore PB]]
-
[[Category: Yeast]]
+
[[Category: Shi H]]

Current revision

The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution

PDB ID 1ehz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools