2hyk

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(New page: 200px<br /><applet load="2hyk" size="350" color="white" frame="true" align="right" spinBox="true" caption="2hyk, resolution 1.300&Aring;" /> '''The crystal structu...)
Current revision (13:52, 13 March 2024) (edit) (undo)
 
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[[Image:2hyk.jpg|left|200px]]<br /><applet load="2hyk" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2hyk, resolution 1.300&Aring;" />
 
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'''The crystal structure of an endo-beta-1,3-glucanase from alkaliphilic Nocardiopsis sp.strain F96'''<br />
 
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==About this Structure==
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==The crystal structure of an endo-beta-1,3-glucanase from alkaliphilic Nocardiopsis sp.strain F96==
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2HYK is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Nocardiopsis_sp. Nocardiopsis sp.] with <scene name='pdbligand=SO4:'>SO4</scene>, <scene name='pdbligand=CA:'>CA</scene>, <scene name='pdbligand=EOH:'>EOH</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Glucan_endo-1,3-beta-D-glucosidase Glucan endo-1,3-beta-D-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.39 3.2.1.39] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HYK OCA].
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<StructureSection load='2hyk' size='340' side='right'caption='[[2hyk]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2hyk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nocardiopsis_sp._F96 Nocardiopsis sp. F96]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HYK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HYK FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EOH:ETHANOL'>EOH</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hyk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hyk OCA], [https://pdbe.org/2hyk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hyk RCSB], [https://www.ebi.ac.uk/pdbsum/2hyk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hyk ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q2V0H0_9ACTN Q2V0H0_9ACTN]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hy/2hyk_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hyk ConSurf].
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<div style="clear:both"></div>
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==Reference==
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==See Also==
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The 1.3 A crystal structure of a novel endo-beta-1,3-glucanase of glycoside hydrolase family 16 from alkaliphilic Nocardiopsis sp. strain F96., Fibriansah G, Masuda S, Koizumi N, Nakamura S, Kumasaka T, Proteins. 2007 Nov 15;69(3):683-90. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=17879342 17879342]
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*[[Glucanase 3D structures|Glucanase 3D structures]]
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[[Category: Glucan endo-1,3-beta-D-glucosidase]]
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__TOC__
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[[Category: Nocardiopsis sp.]]
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</StructureSection>
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Fibriansah, G.]]
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[[Category: Nocardiopsis sp. F96]]
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[[Category: Kumasaka, T.]]
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[[Category: Fibriansah G]]
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[[Category: Nakamura, S.]]
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[[Category: Kumasaka T]]
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[[Category: CA]]
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[[Category: Nakamura S]]
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[[Category: EOH]]
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[[Category: GOL]]
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[[Category: SO4]]
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[[Category: 3-glucanase]]
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[[Category: bacterial endo-beta-1]]
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[[Category: beta-jelly roll]]
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[[Category: family 16]]
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[[Category: hydrolase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:16:52 2008''
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Current revision

The crystal structure of an endo-beta-1,3-glucanase from alkaliphilic Nocardiopsis sp.strain F96

PDB ID 2hyk

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