2jva
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2jva" size="350" color="white" frame="true" align="right" spinBox="true" caption="2jva" /> '''NMR solution structure of peptidyl-tRNA hydr...) |
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| - | [[Image:2jva.jpg|left|200px]]<br /><applet load="2jva" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2jva" /> | ||
| - | '''NMR solution structure of peptidyl-tRNA hydrolase domain protein from Pseudomonas syringae pv. tomato. Northeast Structural Genomics Consortium target PsR211'''<br /> | ||
| - | == | + | ==NMR solution structure of peptidyl-tRNA hydrolase domain protein from Pseudomonas syringae pv. tomato. Northeast Structural Genomics Consortium target PsR211== |
| - | + | <StructureSection load='2jva' size='340' side='right'caption='[[2jva]]' scene=''> | |
| - | [ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[2jva]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_syringae_pv._tomato_str._DC3000 Pseudomonas syringae pv. tomato str. DC3000]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JVA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JVA FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr> | |
| - | [ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jva OCA], [https://pdbe.org/2jva PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jva RCSB], [https://www.ebi.ac.uk/pdbsum/2jva PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jva ProSAT], [https://www.topsan.org/Proteins/NESGC/2jva TOPSAN]</span></td></tr> |
| - | + | </table> | |
| - | [ | + | == Function == |
| - | + | [https://www.uniprot.org/uniprot/Q885L4_PSESM Q885L4_PSESM] | |
| - | + | == Evolutionary Conservation == | |
| - | [ | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [ | + | Check<jmol> |
| - | [ | + | <jmolCheckbox> |
| - | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jv/2jva_consurf.spt"</scriptWhenChecked> | |
| - | [ | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> |
| - | + | <text>to colour the structure by Evolutionary Conservation</text> | |
| - | + | </jmolCheckbox> | |
| - | [ | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jva ConSurf]. |
| - | [[ | + | <div style="clear:both"></div> |
| - | + | <div style="background-color:#fffaf0;"> | |
| - | + | == Publication Abstract from PubMed == | |
| - | [ | + | The NMR structure of the peptidyl-tRNA hydrolase (PTH) domain from Pseudomonas syringae (P. syringae PTH domain) was solved by using recently devised protocol for high throughput protein structure determination. The P. syringae PTH domain belongs to a large Pfam family PF00472, which consists of at least 1549 proteins annotated as 'hydrolysis domains of peptidyl-tRNA'. The structure of P. syringae PTH domain expands the 'structural coverage' of the PFam family. |
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| - | + | NMR structure of the peptidyl-tRNA hydrolase domain from Pseudomonas syringae expands the structural coverage of the hydrolysis domains of class 1 peptide chain release factors.,Singarapu KK, Xiao R, Acton T, Rost B, Montelione GT, Szyperski T Proteins. 2008 May 1;71(2):1027-31. doi: 10.1002/prot.21947. PMID:18247350<ref>PMID:18247350</ref> | |
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 2jva" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Pseudomonas syringae pv. tomato str. DC3000]] | ||
| + | [[Category: Acton TB]] | ||
| + | [[Category: Baran MC]] | ||
| + | [[Category: Eletsky A]] | ||
| + | [[Category: Huang YJ]] | ||
| + | [[Category: Jiang M]] | ||
| + | [[Category: Liu J]] | ||
| + | [[Category: Maglaqui M]] | ||
| + | [[Category: Montelione GT]] | ||
| + | [[Category: Parish D]] | ||
| + | [[Category: Rost B]] | ||
| + | [[Category: Singarapu KK]] | ||
| + | [[Category: Sukumaran D]] | ||
| + | [[Category: Swapna GVT]] | ||
| + | [[Category: Szyperski T]] | ||
| + | [[Category: Xiao R]] | ||
| + | [[Category: Zhang Q]] | ||
| + | [[Category: Zhao L]] | ||
Current revision
NMR solution structure of peptidyl-tRNA hydrolase domain protein from Pseudomonas syringae pv. tomato. Northeast Structural Genomics Consortium target PsR211
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Categories: Large Structures | Pseudomonas syringae pv. tomato str. DC3000 | Acton TB | Baran MC | Eletsky A | Huang YJ | Jiang M | Liu J | Maglaqui M | Montelione GT | Parish D | Rost B | Singarapu KK | Sukumaran D | Swapna GVT | Szyperski T | Xiao R | Zhang Q | Zhao L
