3iiu

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[[Image:3iiu.png|left|200px]]
 
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==Structure of the reconstituted Peridinin-Chlorophyll a-Protein (RFPCP) mutant N89L==
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The line below this paragraph, containing "STRUCTURE_3iiu", creates the "Structure Box" on the page.
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<StructureSection load='3iiu' size='340' side='right'caption='[[3iiu]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3iiu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Amphidinium_carterae Amphidinium carterae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IIU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IIU FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=J7Z:(2S)-3-[(6-O-ALPHA-D-GALACTOPYRANOSYL-BETA-D-GALACTOPYRANOSYL)OXY]-2-[(3Z,6Z,9Z,12Z,15Z)-OCTADECA-3,6,9,12,15-PENTAENOYLOXY]PROPYL+(5Z,8Z,11Z,14Z,17Z)-ICOSA-5,8,11,14,17-PENTAENOATE'>J7Z</scene>, <scene name='pdbligand=PID:PERIDININ'>PID</scene></td></tr>
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{{STRUCTURE_3iiu| PDB=3iiu | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iiu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iiu OCA], [https://pdbe.org/3iiu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iiu RCSB], [https://www.ebi.ac.uk/pdbsum/3iiu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iiu ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PCP1_AMPCA PCP1_AMPCA] Water-soluble antenna for capture of solar energy in the blue-green range. Peridinin is an asymmetric carotenoid.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ii/3iiu_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3iiu ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The peridinin-chlorophyll a-protein (PCP) of dinoflagellates is unique among the large variety of natural photosynthetic light-harvesting systems. In contrast to other chlorophyll protein complexes, the soluble PCP is located in the thylakoid lumen, and the carotenoid pigments outnumber the chlorophylls. The structure of the PCP complex consists of two symmetric domains, each with a central chlorophyll a (Chl-a) surrounded by four peridinin molecules. The protein provides distinctive surroundings for the pigment molecules, and in PCP, the specific environment around each peridinin results in overlapping spectral line shapes, suggestive of different functions within the protein. One particular Per, Per-614, is hypothesized to show the strongest electronic interaction with the central Chl-a. We have performed an in vitro reconstitution of pigments into recombinant PCP apo-protein (RFPCP) and into a mutated protein with an altered environment near Per-614. Steady-state and transient optical spectroscopic experiments comparing the RFPCP complex with the reconstituted mutant protein identify specific amino acid-induced spectral shifts. The spectroscopic assignments are reinforced by a determination of the structures of both RFPCP and the mutant by x-ray crystallography to a resolution better than 1.5 A. RFPCP and mutated RFPCP are unique in representing crystal structures of in vitro reconstituted light-harvesting pigment-protein complexes.
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===Structure of the reconstituted Peridinin-Chlorophyll a-Protein (RFPCP) mutant N89L===
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Identification of a single peridinin sensing Chl-a excitation in reconstituted PCP by crystallography and spectroscopy.,Schulte T, Niedzwiedzki DM, Birge RR, Hiller RG, Polivka T, Hofmann E, Frank HA Proc Natl Acad Sci U S A. 2009 Dec 8;106(49):20764-9. Epub 2009 Nov 23. PMID:19934052<ref>PMID:19934052</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19934052}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3iiu" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19934052 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19934052}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[3iiu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Amphidinium_carterae Amphidinium carterae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IIU OCA].
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==Reference==
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<ref group="xtra">PMID:19934052</ref><references group="xtra"/>
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[[Category: Amphidinium carterae]]
[[Category: Amphidinium carterae]]
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[[Category: Hofmann, E.]]
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[[Category: Large Structures]]
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[[Category: Schulte, T.]]
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[[Category: Hofmann E]]
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[[Category: Schulte T]]

Current revision

Structure of the reconstituted Peridinin-Chlorophyll a-Protein (RFPCP) mutant N89L

PDB ID 3iiu

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