This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rbd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2rbd" size="350" color="white" frame="true" align="right" spinBox="true" caption="2rbd, resolution 1.540&Aring;" /> '''Crystal structure o...)
Current revision (06:50, 25 January 2023) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2rbd.gif|left|200px]]<br /><applet load="2rbd" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2rbd, resolution 1.540&Aring;" />
 
-
'''Crystal structure of a domain with unknown function and a ferritin-like fold (NP_243224.1) from Bacillus halodurans at 1.54 A resolution'''<br />
 
-
==About this Structure==
+
==CRYSTAL STRUCTURE OF A PUTATIVE SPORE COAT PROTEIN (BH2358) FROM BACILLUS HALODURANS C-125 AT 1.54 A RESOLUTION==
-
2RBD is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacteria Bacteria] with <scene name='pdbligand=PG4:'>PG4</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RBD OCA].
+
<StructureSection load='2rbd' size='340' side='right'caption='[[2rbd]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
-
[[Category: Bacteria]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2rbd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans_C-125 Alkalihalobacillus halodurans C-125]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RBD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RBD FirstGlance]. <br>
-
[[Category: JCSG, Joint.Center.for.Structural.Genomics.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PG4:TETRAETHYLENE+GLYCOL'>PG4</scene></td></tr>
-
[[Category: PG4]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rbd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rbd OCA], [https://pdbe.org/2rbd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rbd RCSB], [https://www.ebi.ac.uk/pdbsum/2rbd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rbd ProSAT], [https://www.topsan.org/Proteins/JCSG/2rbd TOPSAN]</span></td></tr>
-
[[Category: domain with unknown function and a ferritin-like fold]]
+
</table>
-
[[Category: jcsg]]
+
== Function ==
-
[[Category: joint center for structural genomics]]
+
[https://www.uniprot.org/uniprot/Q9KAD1_HALH5 Q9KAD1_HALH5]
-
[[Category: np_243224.1]]
+
== Evolutionary Conservation ==
-
[[Category: protein structure initiative]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: psi-2]]
+
Check<jmol>
-
[[Category: structural genomics]]
+
<jmolCheckbox>
-
[[Category: unknown function]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/rb/2rbd_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:22:42 2008''
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rbd ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Alkalihalobacillus halodurans C-125]]
 +
[[Category: Large Structures]]

Current revision

CRYSTAL STRUCTURE OF A PUTATIVE SPORE COAT PROTEIN (BH2358) FROM BACILLUS HALODURANS C-125 AT 1.54 A RESOLUTION

PDB ID 2rbd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools