3pl6

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[[Image:3pl6.png|left|200px]]
 
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==Structure of Autoimmune TCR Hy.1B11 in complex with HLA-DQ1 and MBP 85-99==
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The line below this paragraph, containing "STRUCTURE_3pl6", creates the "Structure Box" on the page.
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<StructureSection load='3pl6' size='340' side='right'caption='[[3pl6]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3pl6]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PL6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PL6 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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{{STRUCTURE_3pl6| PDB=3pl6 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pl6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pl6 OCA], [https://pdbe.org/3pl6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pl6 RCSB], [https://www.ebi.ac.uk/pdbsum/3pl6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pl6 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A173ADG5_HUMAN A0A173ADG5_HUMAN]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Self-reactive T cells that escape elimination in the thymus can cause autoimmune pathology, and it is therefore important to understand the structural mechanisms of self-antigen recognition. We report the crystal structure of a T cell receptor (TCR) from a patient with relapsing-remitting multiple sclerosis that engages its self-peptide-major histocompatibility complex (pMHC) ligand in an unusual manner. The TCR is bound in a highly tilted orientation that prevents interaction of the TCR-alpha chain with the MHC class II beta chain helix. In this structure, only a single germline-encoded TCR loop engages the MHC protein, whereas in most other TCR-pMHC structures all four germline-encoded TCR loops bind to the MHC helices. The tilted binding mode also prevents peptide contacts by the short complementarity-determining region (CDR) 3beta loop, and interactions that contribute to peptide side chain specificity are focused on the CDR3alpha loop. This structure is the first example in which only a single germline-encoded TCR loop contacts the MHC helices. Furthermore, the reduced interaction surface with the peptide may facilitate TCR cross-reactivity. The structural alterations in the trimolecular complex are distinct from previously characterized self-reactive TCRs, indicating that there are multiple unusual ways for self-reactive TCRs to bind their pMHC ligand.
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===Structure of Autoimmune TCR Hy.1B11 in complex with HLA-DQ1 and MBP 85-99===
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A highly tilted binding mode by a self-reactive T cell receptor results in altered engagement of peptide and MHC.,Sethi DK, Schubert DA, Anders AK, Heroux A, Bonsor DA, Thomas CP, Sundberg EJ, Pyrdol J, Wucherpfennig KW J Exp Med. 2011 Jan 17;208(1):91-102. Epub 2011 Jan 3. PMID:21199956<ref>PMID:21199956</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3pl6" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_21199956}}, adds the Publication Abstract to the page
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*[[MHC 3D structures|MHC 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 21199956 is the PubMed ID number.
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*[[MHC II 3D structures|MHC II 3D structures]]
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*[[T-cell receptor 3D structures|T-cell receptor 3D structures]]
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{{ABSTRACT_PUBMED_21199956}}
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== References ==
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<references/>
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==About this Structure==
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__TOC__
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[[3pl6]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PL6 OCA].
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</StructureSection>
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==Reference==
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<ref group="xtra">PMID:21199956</ref><references group="xtra"/>
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Sethi, D K.]]
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[[Category: Large Structures]]
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[[Category: Wucherpfennig, K W.]]
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[[Category: Sethi DK]]
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[[Category: Wucherpfennig KW]]

Current revision

Structure of Autoimmune TCR Hy.1B11 in complex with HLA-DQ1 and MBP 85-99

PDB ID 3pl6

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