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2dy1

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(New page: 200px<br /><applet load="2dy1" size="350" color="white" frame="true" align="right" spinBox="true" caption="2dy1, resolution 1.60&Aring;" /> '''Crystal structure of...)
Current revision (08:32, 25 October 2023) (edit) (undo)
 
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[[Image:2dy1.jpg|left|200px]]<br /><applet load="2dy1" size="350" color="white" frame="true" align="right" spinBox="true"
 
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caption="2dy1, resolution 1.60&Aring;" />
 
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'''Crystal structure of EF-G-2 from Thermus thermophilus'''<br />
 
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==About this Structure==
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==Crystal structure of EF-G-2 from Thermus thermophilus==
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2DY1 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=GTP:'>GTP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DY1 OCA].
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<StructureSection load='2dy1' size='340' side='right'caption='[[2dy1]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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[[Category: Single protein]]
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== Structural highlights ==
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[[Category: Thermus thermophilus]]
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<table><tr><td colspan='2'>[[2dy1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DY1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DY1 FirstGlance]. <br>
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[[Category: Chen, L.]]
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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[[Category: Liu, Z.J.]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GTP:GUANOSINE-5-TRIPHOSPHATE'>GTP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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[[Category: Murayama, K.]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dy1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dy1 OCA], [https://pdbe.org/2dy1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dy1 RCSB], [https://www.ebi.ac.uk/pdbsum/2dy1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dy1 ProSAT], [https://www.topsan.org/Proteins/RSGI/2dy1 TOPSAN]</span></td></tr>
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[[Category: RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.]]
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</table>
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[[Category: Shirouzu, M.]]
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== Function ==
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[[Category: Takemoto, C.]]
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[https://www.uniprot.org/uniprot/Q5SI76_THET8 Q5SI76_THET8]
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[[Category: Terada, T.]]
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== Evolutionary Conservation ==
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[[Category: Wang, B.C.]]
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[[Image:Consurf_key_small.gif|200px|right]]
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[[Category: Wang, H.]]
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Check<jmol>
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[[Category: Yokoyama, S.]]
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<jmolCheckbox>
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[[Category: GTP]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dy/2dy1_consurf.spt"</scriptWhenChecked>
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[[Category: MG]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: elongation]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: gtp complex]]
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</jmolCheckbox>
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[[Category: national project on protein structural and functional analyses]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dy1 ConSurf].
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[[Category: nppsfa]]
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<div style="clear:both"></div>
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[[Category: riken structural genomics/proteomics initiative]]
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[[Category: rsgi]]
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[[Category: signaling protein]]
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[[Category: structural genomics]]
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[[Category: translation]]
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[[Category: translocation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:24:56 2008''
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==See Also==
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*[[Elongation factor 3D structures|Elongation factor 3D structures]]
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Thermus thermophilus]]
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[[Category: Chen L]]
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[[Category: Liu ZJ]]
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[[Category: Murayama K]]
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[[Category: Shirouzu M]]
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[[Category: Takemoto C]]
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[[Category: Terada T]]
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[[Category: Wang BC]]
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[[Category: Wang H]]
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[[Category: Yokoyama S]]

Current revision

Crystal structure of EF-G-2 from Thermus thermophilus

PDB ID 2dy1

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