2wcv

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[[Image:2wcv.png|left|200px]]
 
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==Crystal structure of bacterial FucU==
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The line below this paragraph, containing "STRUCTURE_2wcv", creates the "Structure Box" on the page.
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<StructureSection load='2wcv' size='340' side='right'caption='[[2wcv]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2wcv]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WCV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WCV FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene></td></tr>
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{{STRUCTURE_2wcv| PDB=2wcv | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wcv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wcv OCA], [https://pdbe.org/2wcv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wcv RCSB], [https://www.ebi.ac.uk/pdbsum/2wcv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wcv ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/FUCM_ECOLI FUCM_ECOLI] Involved in the anomeric conversion of L-fucose. Catalyzes also the interconversion of beta-pyran and beta-furan forms of D-ribose.<ref>PMID:15060078</ref> <ref>PMID:19524593</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wc/2wcv_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wcv ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Escherichia coli FucU (Fucose Unknown) is a dual fucose mutarotase and ribose pyranase, which shares 44% sequence identity with its human counterpart. Herein, we report the structures of E. coli FucU and mouse FucU bound to L-fucose and delineate the catalytic mechanisms underlying the interconversion between stereoisomers of fucose and ribose. E. coli FucU forms a decameric toroid with each active site formed by two adjacent subunits. While one subunit provides most of the fucose-interacting residues including a catalytic tyrosine residue, the other subunit provides a catalytic His-Asp dyad. This active-site feature is critical not only for the mutarotase activity toward L-fucose but also for the pyranase activity toward D-ribose. Structural and biochemical analyses pointed that mouse FucU assembles into four different oligomeric forms, among which the smallest homodimeric form is most abundant and would be the predominant species under physiological conditions. This homodimer has two fucose-binding sites that are devoid of the His-Asp dyad and catalytically inactive, indicating that the mutarotase and the pyranase activities appear dispensable in vertebrates. The defective assembly of the mouse FucU homodimer into the decameric form is due to an insertion of two residues at the N-terminal extreme, which is a common aspect of all the known vertebrate FucU proteins. Therefore, vertebrate FucU appears to serve for as yet unknown function through the quaternary structural alteration.
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===CRYSTAL STRUCTURE OF BACTERIAL FUCU===
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Crystal structures and enzyme mechanisms of a dual fucose mutarotase/ribose pyranase.,Lee KH, Ryu KS, Kim MS, Suh HY, Ku B, Song YL, Ko S, Lee W, Oh BH J Mol Biol. 2009 Aug 7;391(1):178-91. Epub 2009 Jun 11. PMID:19524593<ref>PMID:19524593</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_19524593}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2wcv" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 19524593 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19524593}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[2wcv]] is a 10 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WCV OCA].
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==Reference==
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<ref group="xtra">PMID:19524593</ref><references group="xtra"/>
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Kim, M S.]]
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[[Category: Large Structures]]
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[[Category: Ku, B.]]
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[[Category: Kim M-S]]
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[[Category: Lee, K H.]]
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[[Category: Ku B]]
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[[Category: Oh, B H.]]
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[[Category: Lee K-H]]
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[[Category: Song, Y L.]]
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[[Category: Oh B-H]]
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[[Category: Suh, H Y.]]
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[[Category: Song Y-L]]
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[[Category: Suh H-Y]]

Current revision

Crystal structure of bacterial FucU

PDB ID 2wcv

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