This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2rae

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2rae" size="350" color="white" frame="true" align="right" spinBox="true" caption="2rae, resolution 2.20&Aring;" /> '''Crystal structure of...)
Current revision (09:21, 21 February 2024) (edit) (undo)
 
(14 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2rae.jpg|left|200px]]<br /><applet load="2rae" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2rae, resolution 2.20&Aring;" />
 
-
'''Crystal structure of a TetR/AcrR family transcriptional regulator from Rhodococcus sp. RHA1'''<br />
 
-
==About this Structure==
+
==Crystal structure of a TetR/AcrR family transcriptional regulator from Rhodococcus sp. RHA1==
-
2RAE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Rhodococcus_sp._rha1 Rhodococcus sp. rha1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RAE OCA].
+
<StructureSection load='2rae' size='340' side='right'caption='[[2rae]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
[[Category: Rhodococcus sp. rha1]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2rae]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2RAE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2RAE FirstGlance]. <br>
-
[[Category: Edwards, A.M.]]
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
[[Category: Joachimiak, A.]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2rae FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rae OCA], [https://pdbe.org/2rae PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2rae RCSB], [https://www.ebi.ac.uk/pdbsum/2rae PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2rae ProSAT], [https://www.topsan.org/Proteins/MCSG/2rae TOPSAN]</span></td></tr>
-
[[Category: Kagan, O.]]
+
</table>
-
[[Category: MCSG, Midwest.Center.for.Structural.Genomics.]]
+
== Function ==
-
[[Category: Savchenko, A.]]
+
[https://www.uniprot.org/uniprot/Q0S3N9_RHOJR Q0S3N9_RHOJR]
-
[[Category: Skarina, T.]]
+
== Evolutionary Conservation ==
-
[[Category: Zhang, R.]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: dna-binding]]
+
Check<jmol>
-
[[Category: mcsg]]
+
<jmolCheckbox>
-
[[Category: midwest center for structural genomics]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ra/2rae_consurf.spt"</scriptWhenChecked>
-
[[Category: protein structure initiative]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: psi-2]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: rha08332]]
+
</jmolCheckbox>
-
[[Category: structural genomics]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2rae ConSurf].
-
[[Category: tetr/acrr family transcriptional regulator]]
+
<div style="clear:both"></div>
-
[[Category: transcription regulation]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:31:01 2008''
+
==See Also==
 +
*[[Transcriptional activator 3D structures|Transcriptional activator 3D structures]]
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Rhodococcus jostii RHA1]]
 +
[[Category: Edwards AM]]
 +
[[Category: Joachimiak A]]
 +
[[Category: Kagan O]]
 +
[[Category: Savchenko A]]
 +
[[Category: Skarina T]]
 +
[[Category: Zhang R]]

Current revision

Crystal structure of a TetR/AcrR family transcriptional regulator from Rhodococcus sp. RHA1

PDB ID 2rae

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools