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2r5s
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2r5s" size="350" color="white" frame="true" align="right" spinBox="true" caption="2r5s, resolution 2.14Å" /> '''The crystal structur...) |
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| - | [[Image:2r5s.jpg|left|200px]]<br /><applet load="2r5s" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2r5s, resolution 2.14Å" /> | ||
| - | '''The crystal structure of a domain of protein VP0806 (unknown function) from Vibrio parahaemolyticus RIMD 2210633'''<br /> | ||
| - | == | + | ==The crystal structure of a domain of protein VP0806 (unknown function) from Vibrio parahaemolyticus RIMD 2210633== |
| - | + | <StructureSection load='2r5s' size='340' side='right'caption='[[2r5s]], [[Resolution|resolution]] 2.14Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| + | <table><tr><td colspan='2'>[[2r5s]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2R5S OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2R5S FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene></td></tr> | ||
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP0806 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2r5s FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2r5s OCA], [https://pdbe.org/2r5s PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2r5s RCSB], [https://www.ebi.ac.uk/pdbsum/2r5s PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2r5s ProSAT], [https://www.topsan.org/Proteins/MCSG/2r5s TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r5/2r5s_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2r5s ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Vibpa]] | ||
| + | [[Category: Abdullah, J]] | ||
| + | [[Category: Freeman, L]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Tan, K]] | ||
| + | [[Category: Wu, R]] | ||
| + | [[Category: Apc090868 1]] | ||
| + | [[Category: Mcsg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Protein vp0806]] | ||
| + | [[Category: Unknown function]] | ||
[[Category: Vibrio parahaemolyticus rimd 2210633]] | [[Category: Vibrio parahaemolyticus rimd 2210633]] | ||
| - | [[Category: Abdullah, J.]] | ||
| - | [[Category: Freeman, L.]] | ||
| - | [[Category: Joachimiak, A.]] | ||
| - | [[Category: MCSG, Midwest.Center.for.Structural.Genomics.]] | ||
| - | [[Category: Tan, K.]] | ||
| - | [[Category: Wu, R.]] | ||
| - | [[Category: ACT]] | ||
| - | [[Category: EDO]] | ||
| - | [[Category: MES]] | ||
| - | [[Category: apc090868.1]] | ||
| - | [[Category: mcsg]] | ||
| - | [[Category: midwest center for structural genomics]] | ||
| - | [[Category: protein structure initiative]] | ||
| - | [[Category: protein vp0806]] | ||
| - | [[Category: psi-2]] | ||
| - | [[Category: structural genomics]] | ||
| - | [[Category: unknown function]] | ||
| - | [[Category: vibrio parahaemolyticus rimd 2210633]] | ||
| - | |||
| - | ''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:36:07 2008'' | ||
Current revision
The crystal structure of a domain of protein VP0806 (unknown function) from Vibrio parahaemolyticus RIMD 2210633
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