This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2qml

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2qml" size="350" color="white" frame="true" align="right" spinBox="true" caption="2qml, resolution 1.550&Aring;" /> '''Crystal structure o...)
Current revision (06:50, 25 January 2023) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qml.jpg|left|200px]]<br /><applet load="2qml" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2qml, resolution 1.550&Aring;" />
 
-
'''Crystal structure of uncharacterized protein BH2621 (NP_243487.1) from Bacillus halodurans at 1.55 A resolution'''<br />
 
-
==About this Structure==
+
==Crystal structure of an uncharacterized protein (bh2621) from bacillus halodurans at 1.55 A resolution==
-
2QML is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_halodurans Bacillus halodurans] with <scene name='pdbligand=CL:'>CL</scene> and <scene name='pdbligand=GOL:'>GOL</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QML OCA].
+
<StructureSection load='2qml' size='340' side='right'caption='[[2qml]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
-
[[Category: Bacillus halodurans]]
+
== Structural highlights ==
-
[[Category: Single protein]]
+
<table><tr><td colspan='2'>[[2qml]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans Alkalihalobacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QML OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QML FirstGlance]. <br>
-
[[Category: JCSG, Joint.Center.for.Structural.Genomics.]]
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
[[Category: CL]]
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qml OCA], [https://pdbe.org/2qml PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qml RCSB], [https://www.ebi.ac.uk/pdbsum/2qml PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qml ProSAT], [https://www.topsan.org/Proteins/JCSG/2qml TOPSAN]</span></td></tr>
-
[[Category: GOL]]
+
</table>
-
[[Category: jcsg]]
+
== Function ==
-
[[Category: joint center for structural genomics]]
+
[https://www.uniprot.org/uniprot/Q9K9M4_HALH5 Q9K9M4_HALH5]
-
[[Category: np_243487.1]]
+
== Evolutionary Conservation ==
-
[[Category: protein structure initiative]]
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: psi-2]]
+
Check<jmol>
-
[[Category: structural genomics]]
+
<jmolCheckbox>
-
[[Category: uncharacterized protein bh2621]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qm/2qml_consurf.spt"</scriptWhenChecked>
-
[[Category: unknown function]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 13:46:57 2008''
+
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qml ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Alkalihalobacillus halodurans]]
 +
[[Category: Large Structures]]

Current revision

Crystal structure of an uncharacterized protein (bh2621) from bacillus halodurans at 1.55 A resolution

PDB ID 2qml

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools