2xl8

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[[Image:2xl8.png|left|200px]]
 
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==REDUCED STRUCTURE OF R124F MUTANT OF CYTOCHROME C' FROM ALCALIGENES XYLOSOXIDANS==
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The line below this paragraph, containing "STRUCTURE_2xl8", creates the "Structure Box" on the page.
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<StructureSection load='2xl8' size='340' side='right'caption='[[2xl8]], [[Resolution|resolution]] 1.14&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2xl8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XL8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XL8 FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.14&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_2xl8| PDB=2xl8 | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xl8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xl8 OCA], [https://pdbe.org/2xl8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xl8 RCSB], [https://www.ebi.ac.uk/pdbsum/2xl8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xl8 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CYCP_ALCXX CYCP_ALCXX] Cytochrome c' is the most widely occurring bacterial c-type cytochrome. Cytochromes c' are high-spin proteins and the heme has no sixth ligand. Their exact function is not known.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xl/2xl8_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2xl8 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Hemoproteins play central roles in the formation and utilization of nitric oxide (NO) in cellular signalling, as well as in protection against nitrosative stress. Key to heme-nitrosyl function and reactivity is the Fe coordination number (5 or 6). For 5c-NO complexes, the potential exists for NO to bind on either heme face, as in the microbial cytochrome c' from Alcaligenes xylosoxidans (AxCYTcp), which forms a stable proximal 5c-NO complex via a distal 6c-NO intermediate and a putative dinitrosyl species. Strong parallels between the NO binding kinetics of AxCYTcp, the eukaryotic NO-sensor, soluble guanylate cyclase, and the ferrocytochrome c/cardiolipin complex have led to the suggestion that a distal to proximal NO switch could contribute to the selective ligand responses in gas-sensing hemoproteins. The proximal NO binding site in AxCYTcp is close to a conserved basic (Arg 124) residue that is postulated to modulate NO reactivity. We have replaced Arg 124 by five different amino acids and have determined high-resolution (1.07-1.40A) crystallographic structures with and without NO. These, together with kinetic and resonance Raman data, provide new insights into the mechanism of distal to proximal heme-NO conversion, including the determinants of Fe-His bond scission. The Arg124Ala variant allowed us to determine the structure of an analog of the previously unobserved key 5c-NO distal intermediate species. The very high-resolution structures combined with the extensive spectroscopic and kinetic data have allowed us to provide a fresh insight into heme reactivity towards NO, a reaction that is of wide importance in biology.
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===REDUCED STRUCTURE OF R124F MUTANT OF CYTOCHROME C' FROM ALCALIGENES XYLOSOXIDANS===
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Distal to proximal NO conversion in hemoproteins: The role of the proximal pocket.,Hough MA, Antonyuk SV, Barbieri S, Rustage N, McKay AL, Servid AE, Eady RR, Andrew CR, Hasnain SS J Mol Biol. 2010 Nov 9. PMID:21073879<ref>PMID:21073879</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2xl8" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_21073879}}, adds the Publication Abstract to the page
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*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 21073879 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_21073879}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[2xl8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XL8 OCA].
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==Reference==
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<ref group="xtra">PMID:21073879</ref><references group="xtra"/>
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[[Category: Achromobacter xylosoxidans]]
[[Category: Achromobacter xylosoxidans]]
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[[Category: Andrew, C R.]]
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[[Category: Large Structures]]
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[[Category: Antonyuk, S V.]]
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[[Category: Andrew CR]]
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[[Category: Barbieri, S.]]
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[[Category: Antonyuk SV]]
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[[Category: Eady, R R.]]
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[[Category: Barbieri S]]
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[[Category: Hasnain, S S.]]
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[[Category: Eady RR]]
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[[Category: Hough, M A.]]
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[[Category: Hasnain SS]]
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[[Category: Mckay, A L.]]
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[[Category: Hough MA]]
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[[Category: Rustage, N.]]
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[[Category: McKay AL]]
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[[Category: Servid, A E.]]
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[[Category: Rustage N]]
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[[Category: Servid AE]]

Current revision

REDUCED STRUCTURE OF R124F MUTANT OF CYTOCHROME C' FROM ALCALIGENES XYLOSOXIDANS

PDB ID 2xl8

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