3pee

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[[Image:3pee.jpg|left|200px]]
 
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==Structure of the C. difficile TcdB cysteine protease domain==
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The line below this paragraph, containing "STRUCTURE_3pee", creates the "Structure Box" on the page.
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<StructureSection load='3pee' size='340' side='right'caption='[[3pee]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3pee]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridioides_difficile_630 Clostridioides difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PEE FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=IHP:INOSITOL+HEXAKISPHOSPHATE'>IHP</scene></td></tr>
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{{STRUCTURE_3pee| PDB=3pee | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pee OCA], [https://pdbe.org/3pee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pee RCSB], [https://www.ebi.ac.uk/pdbsum/3pee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pee ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q189K3_CLOD6 Q189K3_CLOD6]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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An internal cysteine protease domain (CPD) autoproteolytically regulates Clostridium difficile glucosylating toxins by releasing a cytotoxic effector domain into target cells. CPD activity is itself allosterically regulated by the eukaryote-specific molecule inositol hexakisphosphate (InsP(6)). Although allostery controls the function of most proteins, the molecular details underlying this regulatory mechanism are often difficult to characterize. Here we use chemical probes to show that apo-CPD is in dynamic equilibrium between active and inactive states. InsP(6) markedly shifts this equilibrium toward an active conformer that is further restrained upon binding a suicide substrate. Structural analyses combined with systematic mutational and disulfide bond engineering studies show that residues within a beta-hairpin region functionally couple the InsP(6)-binding site to the active site. Collectively, our results identify an allosteric circuit that allows bacterial virulence factors to sense and respond to the eukaryotic environment.
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===Structure of the C. difficile TcdB cysteine protease domain===
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Defining an allosteric circuit in the cysteine protease domain of Clostridium difficile toxins.,Shen A, Lupardus PJ, Gersch MM, Puri AW, Albrow VE, Garcia KC, Bogyo M Nat Struct Mol Biol. 2011 Mar;18(3):364-71. Epub 2011 Feb 13. PMID:21317893<ref>PMID:21317893</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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[[3pee]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_difficile_630 Clostridium difficile 630]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PEE OCA].
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<div class="pdbe-citations 3pee" style="background-color:#fffaf0;"></div>
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[[Category: Clostridium difficile 630]]
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== References ==
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[[Category: Garcia, K C.]]
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<references/>
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[[Category: Lupardus, P J.]]
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__TOC__
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</StructureSection>
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[[Category: Clostridioides difficile 630]]
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[[Category: Large Structures]]
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[[Category: Garcia KC]]
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[[Category: Lupardus PJ]]

Current revision

Structure of the C. difficile TcdB cysteine protease domain

PDB ID 3pee

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