This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3q45

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:33, 14 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3q45.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of Dipeptide Epimerase from Cytophaga hutchinsonii complexed with Mg and dipeptide D-Ala-L-Val==
-
The line below this paragraph, containing "STRUCTURE_3q45", creates the "Structure Box" on the page.
+
<StructureSection load='3q45' size='340' side='right'caption='[[3q45]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3q45]] is a 9 chain structure with sequence from [https://en.wikipedia.org/wiki/Cytophaga_hutchinsonii_ATCC_33406 Cytophaga hutchinsonii ATCC 33406]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q45 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3Q45 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DAL:D-ALANINE'>DAL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=VAL:VALINE'>VAL</scene></td></tr>
-
{{STRUCTURE_3q45| PDB=3q45 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3q45 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3q45 OCA], [https://pdbe.org/3q45 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3q45 RCSB], [https://www.ebi.ac.uk/pdbsum/3q45 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3q45 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AAEP_CYTH3 AAEP_CYTH3] Catalyzes the epimerization of D-Ala-D-Ala to D-Ala-L-Ala. Has broad substrate specificity and catalyzes the epimerization of a variety of dipeptides containing an N-terminal Ala followed by a hydrophobic or polar residue, such as Val, Ser and Met (in vitro).<ref>PMID:22392983</ref>
-
===Crystal structure of Dipeptide Epimerase from Cytophaga hutchinsonii complexed with Mg and dipeptide D-Ala-L-Val===
+
==See Also==
-
 
+
*[[Mandelate racemase/muconate lactonizing enzyme 3D structures|Mandelate racemase/muconate lactonizing enzyme 3D structures]]
-
 
+
*[[Muconate cycloisomerase|Muconate cycloisomerase]]
-
==About this Structure==
+
== References ==
-
[[3q45]] is a 9 chain structure with sequence from [http://en.wikipedia.org/wiki/Cytophaga_hutchinsonii Cytophaga hutchinsonii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3Q45 OCA].
+
<references/>
-
[[Category: Chloromuconate cycloisomerase]]
+
__TOC__
-
[[Category: Cytophaga hutchinsonii]]
+
</StructureSection>
-
[[Category: Gerlt, J A.]]
+
[[Category: Cytophaga hutchinsonii ATCC 33406]]
-
[[Category: Lukk, T.]]
+
[[Category: Large Structures]]
-
[[Category: Nair, S K.]]
+
[[Category: Gerlt JA]]
 +
[[Category: Lukk T]]
 +
[[Category: Nair SK]]

Current revision

Crystal structure of Dipeptide Epimerase from Cytophaga hutchinsonii complexed with Mg and dipeptide D-Ala-L-Val

PDB ID 3q45

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools