3aex

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[[Image:3aex.png|left|200px]]
 
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==Catalytic intermediate analogue of threonine synthase from Thermus thermophilus HB8==
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The line below this paragraph, containing "STRUCTURE_3aex", creates the "Structure Box" on the page.
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<StructureSection load='3aex' size='340' side='right'caption='[[3aex]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3aex]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AEX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AEX FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AN7:(3E)-4-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}-2-OXOBUT-3-ENOIC+ACID'>AN7</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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{{STRUCTURE_3aex| PDB=3aex | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aex FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aex OCA], [https://pdbe.org/3aex PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aex RCSB], [https://www.ebi.ac.uk/pdbsum/3aex PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aex ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q5SL02_THET8 Q5SL02_THET8] Catalyzes the gamma-elimination of phosphate from L-phosphohomoserine and the beta-addition of water to produce L-threonine.[PIRNR:PIRNR038945]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Threonine synthase (TS), which is a pyridoxal 5'-phosphate (PLP)-dependent enzyme, catalyzes the elimination of the gamma-phosphate group from O-phospho-L-homoserine (OPHS) and the subsequent addition of water at Cbeta to form L-threonine. The catalytic course of TS is the most complex among the PLP enzymes, and it is an intriguing problem how the elementary steps are controlled in TS to carry out selective reactions. When L-vinylglycine was added to Thermus thermophilus HB8 TS in the presence of phosphate, L-threonine was formed with k(cat) and reaction specificity comparable with those when OPHS was used as the substrate. However, in the absence of phosphate or when sulfate was used in place of phosphate, only the side reaction product, alpha-ketobutyrate, was formed. Global analysis of the spectral changes in the reaction of TS with L-threonine showed that compared with the more acidic sulfate ion, the phosphate ion decreased the energy levels of the transition states of the addition of water at the Cbeta of the PLP-alpha-aminocrotonate aldimine (AC) and the transaldimination to form L-threonine. The x-ray crystallographic analysis of TS complexed with an analog for AC gave a distinct electron density assigned to the phosphate ion derived from the solvent near the Cbeta of the analog. These results indicated that the phosphate ion released from OPHS by gamma-elimination acts as the base catalyst for the addition of water at Cbeta of AC, thereby providing the basis of the reaction specificity. The phosphate ion is also considered to accelerate the protonation/deprotonation at Cgamma.
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===Catalytic intermediate analogue of threonine synthase from Thermus thermophilus HB8===
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Product-assisted catalysis as the basis of the reaction specificity of threonine synthase.,Murakawa T, Machida Y, Hayashi H J Biol Chem. 2011 Jan 28;286(4):2774-84. Epub 2010 Nov 17. PMID:21084312<ref>PMID:21084312</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_21084312}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3aex" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 21084312 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_21084312}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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[[3aex]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AEX OCA].
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[[Category: Thermus thermophilus HB8]]
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[[Category: Hayashi H]]
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==Reference==
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[[Category: Machida Y]]
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<ref group="xtra">PMID:21084312</ref><references group="xtra"/>
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[[Category: Murakawa T]]
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[[Category: Thermus thermophilus]]
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[[Category: Threonine synthase]]
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[[Category: Hayashi, H.]]
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[[Category: Machida, Y.]]
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[[Category: Murakawa, T.]]
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Current revision

Catalytic intermediate analogue of threonine synthase from Thermus thermophilus HB8

PDB ID 3aex

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