This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2bdz
From Proteopedia
(Difference between revisions)
m (Protected "2bdz" [edit=sysop:move=sysop]) |
|||
| (8 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2bdz.png|left|200px]] | ||
| - | + | ==Mexicain from Jacaratia mexicana== | |
| - | + | <StructureSection load='2bdz' size='340' side='right'caption='[[2bdz]], [[Resolution|resolution]] 2.10Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[2bdz]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Jacaratia_mexicana Jacaratia mexicana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BDZ FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [https://pdbe.org/2bdz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB], [https://www.ebi.ac.uk/pdbsum/2bdz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bdz ProSAT]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/MEX1_JACME MEX1_JACME] Cysteine protease.[REFERENCE:1] | |
| - | + | == Evolutionary Conservation == | |
| - | == | + | [[Image:Consurf_key_small.gif|200px|right]] |
| - | [[2bdz]] is a 4 chain structure with sequence from [ | + | Check<jmol> |
| - | + | <jmolCheckbox> | |
| - | == | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/2bdz_consurf.spt"</scriptWhenChecked> |
| - | < | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bdz ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
[[Category: Jacaratia mexicana]] | [[Category: Jacaratia mexicana]] | ||
| - | [[Category: Garcia-Ruiz | + | [[Category: Large Structures]] |
| - | [[Category: Gavira | + | [[Category: Garcia-Ruiz JM]] |
| - | [[Category: Gonzalez-Ramirez | + | [[Category: Gavira JA]] |
| - | [[Category: Oliver-Salvador | + | [[Category: Gonzalez-Ramirez LA]] |
| - | [[Category: Soriano-Garcia | + | [[Category: Oliver-Salvador MC]] |
| + | [[Category: Soriano-Garcia M]] | ||
Current revision
Mexicain from Jacaratia mexicana
| |||||||||||
