1qkk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:04, 17 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1qkk.png|left|200px]]
 
-
<!--
+
==Crystal structure of the receiver domain and linker region of DctD from Sinorhizobium meliloti==
-
The line below this paragraph, containing "STRUCTURE_1qkk", creates the "Structure Box" on the page.
+
<StructureSection load='1qkk' size='340' side='right'caption='[[1qkk]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1qkk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QKK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1QKK FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1qkk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1qkk OCA], [https://pdbe.org/1qkk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1qkk RCSB], [https://www.ebi.ac.uk/pdbsum/1qkk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1qkk ProSAT]</span></td></tr>
-
{{STRUCTURE_1qkk| PDB=1qkk | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===CRYSTAL STRUCTURE OF THE RECEIVER DOMAIN AND LINKER REGION OF DCTD FROM SINORHIZOBIUM MELILOTI===
+
[https://www.uniprot.org/uniprot/DCTD_RHIME DCTD_RHIME] Member of the two-component regulatory system DctB/DctD involved in the transport of C4-dicarboxylates. When activated by DctB acts in conjunction with sigma-54 to activate the transcription of dctA.
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
[[1qkk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1QKK OCA].
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qk/1qkk_consurf.spt"</scriptWhenChecked>
-
==Reference==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
<ref group="xtra">PMID:11344129</ref><ref group="xtra">PMID:17810339</ref><references group="xtra"/>
+
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1qkk ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Sinorhizobium meliloti]]
[[Category: Sinorhizobium meliloti]]
-
[[Category: Farber, G K.]]
+
[[Category: Farber GK]]
-
[[Category: Kaufman, R I.]]
+
[[Category: Kaufman RI]]
-
[[Category: Mckinstry, M.]]
+
[[Category: Mckinstry M]]
-
[[Category: Meyer, M G.]]
+
[[Category: Meyer MG]]
-
[[Category: Nixon, B T.]]
+
[[Category: Nixon BT]]
-
[[Category: Park, S.]]
+
[[Category: Park S]]
-
[[Category: Staley, M.]]
+
[[Category: Staley M]]
-
[[Category: Yan, D.]]
+
[[Category: Yan D]]
-
[[Category: Yennawar, N.]]
+
[[Category: Yennawar N]]
-
[[Category: Zeringue, L.]]
+
[[Category: Zeringue L]]
-
[[Category: Zhang, H.]]
+
[[Category: Zhang H]]
-
[[Category: 2-component signal transduction]]
+
-
[[Category: Bacterial enhancer binding protein]]
+
-
[[Category: High solvent content crystal]]
+
-
[[Category: Receiver domain]]
+
-
[[Category: Sigma-54 dependent transcriptional activator]]
+
-
[[Category: Transcriptional regulatory protein]]
+

Current revision

Crystal structure of the receiver domain and linker region of DctD from Sinorhizobium meliloti

PDB ID 1qkk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools