1xax

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[[Image:1xax.png|left|200px]]
 
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==NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae==
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The line below this paragraph, containing "STRUCTURE_1xax", creates the "Structure Box" on the page.
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<StructureSection load='1xax' size='340' side='right'caption='[[1xax]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1xax]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XAX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XAX FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xax FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xax OCA], [https://pdbe.org/1xax PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xax RCSB], [https://www.ebi.ac.uk/pdbsum/1xax PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xax ProSAT]</span></td></tr>
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{{STRUCTURE_1xax| PDB=1xax | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/YBEY_HAEIN YBEY_HAEIN] Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.[HAMAP-Rule:MF_00009]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xa/1xax_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xax ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The solution structure of the 154-residue conserved hypothetical protein HI0004 has been determined using multidimensional heteronuclear NMR spectroscopy. HI0004 has sequence homologs in many organisms ranging from bacteria to humans and is believed to be essential in Haemophilus influenzae, although an exact function has yet to be defined. It has a alpha-beta-alpha sandwich architecture consisting of a central four-stranded beta-sheet with the alpha2-helix packed against one side of the beta-sheet and four alpha-helices (alpha1, alpha3, alpha4, alpha5) on the other side. There is structural homology with the eukaryotic matrix metalloproteases (MMPs), but little sequence similarity except for a conserved region containing three histidines that appears in both the MMPs and throughout the HI0004 family of proteins. The solution structure of HI0004 is compared with the X-ray structure of an Aquifex aeolicus homolog, AQ_1354, which has 36% sequence identity over 148 residues. Despite this level of sequence homology, significant differences exist between the two structures. These differences are described along with possible functional implications of the structures.
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===NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae===
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NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae, and comparison with the X-ray structure of an Aquifex aeolicus homolog.,Yeh DC, Parsons LM, Parsons JF, Liu F, Eisenstein E, Orban J Protein Sci. 2005 Feb;14(2):424-30. Epub 2005 Jan 4. PMID:15632286<ref>PMID:15632286</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_15632286}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 1xax" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 15632286 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_15632286}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[1xax]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XAX OCA].
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==Reference==
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<ref group="xtra">PMID:15632286</ref><ref group="xtra">PMID:15017148</ref><references group="xtra"/>
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[[Category: Haemophilus influenzae]]
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[[Category: Eisenstein, E.]]
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[[Category: Liu, F.]]
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[[Category: Orban, J.]]
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[[Category: Parsons, J F.]]
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[[Category: Parsons, L M.]]
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[[Category: S2F, Structure 2.Function Project.]]
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[[Category: Yeh, D C.]]
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[[Category: Haemophilus influenzae]]
[[Category: Haemophilus influenzae]]
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[[Category: Hydrolase]]
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[[Category: Large Structures]]
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[[Category: Mmp]]
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[[Category: Eisenstein E]]
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[[Category: Nmr]]
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[[Category: Liu F]]
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[[Category: Protein structure initiative]]
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[[Category: Orban J]]
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[[Category: S2f]]
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[[Category: Parsons JF]]
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[[Category: Structural genomic]]
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[[Category: Parsons LM]]
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[[Category: Structure 2 function project]]
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[[Category: Yeh DC]]
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[[Category: Unknown function]]
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Current revision

NMR structure of HI0004, a putative essential gene product from Haemophilus influenzae

PDB ID 1xax

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