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2zxq

From Proteopedia

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Current revision (13:58, 13 March 2024) (edit) (undo)
 
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[[Image:2zxq.png|left|200px]]
 
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<!--
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==Crystal structure of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF)==
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The line below this paragraph, containing "STRUCTURE_2zxq", creates the "Structure Box" on the page.
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<StructureSection load='2zxq' size='340' side='right'caption='[[2zxq]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2zxq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bifidobacterium_longum Bifidobacterium longum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZXQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZXQ FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
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{{STRUCTURE_2zxq| PDB=2zxq | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zxq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zxq OCA], [https://pdbe.org/2zxq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zxq RCSB], [https://www.ebi.ac.uk/pdbsum/2zxq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zxq ProSAT]</span></td></tr>
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</table>
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===Crystal structure of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF)===
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== Function ==
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[https://www.uniprot.org/uniprot/Q3T552_BIFL2 Q3T552_BIFL2]
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== Evolutionary Conservation ==
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<!--
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_19502354}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 19502354 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zx/2zxq_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_19502354}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[2zxq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bifidobacterium_longum Bifidobacterium longum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZXQ OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2zxq ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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<ref group="xtra">PMID:19502354</ref><ref group="xtra">PMID:16141207</ref><references group="xtra"/>
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</StructureSection>
[[Category: Bifidobacterium longum]]
[[Category: Bifidobacterium longum]]
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[[Category: Glycopeptide alpha-N-acetylgalactosaminidase]]
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[[Category: Large Structures]]
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[[Category: Ashida, H.]]
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[[Category: Ashida H]]
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[[Category: Fushinobu, S.]]
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[[Category: Fushinobu S]]
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[[Category: Katayama, T.]]
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[[Category: Katayama T]]
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[[Category: Kitaoka, M.]]
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[[Category: Kitaoka M]]
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[[Category: Suzuki, R.]]
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[[Category: Suzuki R]]
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[[Category: Yamamoto, K.]]
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[[Category: Yamamoto K]]
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[[Category: Broken tim barrel]]
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[[Category: Glycosidase]]
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[[Category: Hydrolase]]
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Current revision

Crystal structure of endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum (EngBF)

PDB ID 2zxq

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OCA

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