2v4j

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[[Image:2v4j.png|left|200px]]
 
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==THE CRYSTAL STRUCTURE OF Desulfovibrio vulgaris DISSIMILATORY SULFITE REDUCTASE BOUND TO DsrC PROVIDES NOVEL INSIGHTS INTO THE MECHANISM OF SULFATE RESPIRATION==
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The line below this paragraph, containing "STRUCTURE_2v4j", creates the "Structure Box" on the page.
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<StructureSection load='2v4j' size='340' side='right'caption='[[2v4j]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2v4j]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V4J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2V4J FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SH0:3,3,3,3-[(1R,2S,3S,4S,7S,8S,11S,12S,13S,16S,19S)-3,8,13,17-TETRAKIS(CARBOXYLATOMETHYL)-8,13-DIMETHYL-1,2,3,4,7,8,11,12,13,16,19,20,22,24-TETRADECAHYDROPORPHYRIN-2,7,12,18-TETRAYL]TETRAPROPANOATE'>SH0</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=SRM:SIROHEME'>SRM</scene></td></tr>
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{{STRUCTURE_2v4j| PDB=2v4j | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2v4j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2v4j OCA], [https://pdbe.org/2v4j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2v4j RCSB], [https://www.ebi.ac.uk/pdbsum/2v4j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2v4j ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DSVA_NITV2 DSVA_NITV2] Part of the complex that catalyzes the reduction of sulfite to sulfide. The alpha and beta subunits may have arisen by gene duplication. They both bind 2 iron-sulfur clusters, but the alpha subunit seems to be catalytically inactive, due to substitutions along the putative substrate access channel, and because it binds sirohydrochlorin (the dematallated form of siroheme) instead of siroheme.<ref>PMID:1555572</ref> <ref>PMID:8033912</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/v4/2v4j_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2v4j ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Sulfate reduction is one of the earliest types of energy metabolism used by ancestral organisms to sustain life. Despite extensive studies, many questions remain about the way respiratory sulfate reduction is associated with energy conservation. A crucial enzyme in this process is the dissimilatory sulfite reductase (dSiR), which contains a unique siroheme-[4Fe4S] coupled cofactor. Here, we report the structure of desulfoviridin from Desulfovibrio vulgaris, in which the dSiR DsrAB (sulfite reductase) subunits are bound to the DsrC protein. The alpha(2)beta(2)gamma(2) assembly contains two siroheme-[4Fe4S] cofactors bound by DsrB, two sirohydrochlorins and two [4Fe4S] centers bound by DsrA, and another four [4Fe4S] centers in the ferredoxin domains. A sulfite molecule, coordinating the siroheme, is found at the active site. The DsrC protein is bound in a cleft between DsrA and DsrB with its conserved C-terminal cysteine reaching the distal side of the siroheme. We propose a novel mechanism for the process of sulfite reduction involving DsrAB, DsrC, and the DsrMKJOP membrane complex (a membrane complex with putative disulfide/thiol reductase activity), in which two of the six electrons for reduction of sulfite derive from the membrane quinone pool. These results show that DsrC is involved in sulfite reduction, which changes the mechanism of sulfate respiration. This has important implications for models used to date ancient sulfur metabolism based on sulfur isotope fractionations.
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===THE CRYSTAL STRUCTURE OF DESULFOVIBRIO VULGARIS DISSIMILATORY SULFITE REDUCTASE BOUND TO DSRC PROVIDES NOVEL INSIGHTS INTO THE MECHANISM OF SULFATE RESPIRATION===
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The crystal structure of Desulfovibrio vulgaris dissimilatory sulfite reductase bound to DsrC provides novel insights into the mechanism of sulfate respiration.,Oliveira TF, Vonrhein C, Matias PM, Venceslau SS, Pereira IA, Archer M J Biol Chem. 2008 Dec 5;283(49):34141-9. Epub 2008 Sep 30. PMID:18829451<ref>PMID:18829451</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18829451}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 2v4j" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18829451 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18829451}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Desulfovibrio vulgaris str. Hildenborough]]
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[[2v4j]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2V4J OCA].
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[[Category: Large Structures]]
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[[Category: Archer M]]
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==Reference==
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[[Category: Matias PM]]
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<ref group="xtra">PMID:18829451</ref><ref group="xtra">PMID:18706503</ref><references group="xtra"/>
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[[Category: Oliveira TF]]
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[[Category: Desulfovibrio vulgaris]]
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[[Category: Pereira IAC]]
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[[Category: Hydrogensulfite reductase]]
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[[Category: Venceslau SS]]
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[[Category: Archer, M.]]
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[[Category: Vonrhein C]]
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[[Category: Matias, P M.]]
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[[Category: Oliveira, T F.]]
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[[Category: Pereira, I A.C.]]
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[[Category: Venceslau, S S.]]
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[[Category: Vonrhein, C.]]
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[[Category: Dissimilatory sulfite reductase]]
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[[Category: Oxidoreductase]]
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[[Category: Siroheme]]
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[[Category: Sirohydrochlorin]]
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Current revision

THE CRYSTAL STRUCTURE OF Desulfovibrio vulgaris DISSIMILATORY SULFITE REDUCTASE BOUND TO DsrC PROVIDES NOVEL INSIGHTS INTO THE MECHANISM OF SULFATE RESPIRATION

PDB ID 2v4j

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