3cql

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[[Image:3cql.png|left|200px]]
 
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==Crystal Structure of GH family 19 chitinase from Carica papaya==
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The line below this paragraph, containing "STRUCTURE_3cql", creates the "Structure Box" on the page.
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<StructureSection load='3cql' size='340' side='right'caption='[[3cql]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3cql]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CQL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CQL FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NDG:2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE'>NDG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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{{STRUCTURE_3cql| PDB=3cql | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cql OCA], [https://pdbe.org/3cql PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cql RCSB], [https://www.ebi.ac.uk/pdbsum/3cql PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cql ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/CHIT_CARPA CHIT_CARPA]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cq/3cql_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cql ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The crystal structure of a chitinase from Carica papaya has been solved by the molecular replacement method and is reported to a resolution of 1.5 A. This enzyme belongs to family 19 of the glycosyl hydrolases. Crystals have been obtained in the presence of N-acetyl- d-glucosamine (GlcNAc) in the crystallization solution and two well-defined GlcNAc molecules have been identified in the catalytic cleft of the enzyme, at subsites -2 and +1. These GlcNAc moieties bind to the protein via an extensive network of interactions which also involves many hydrogen bonds mediated by water molecules, underlying their role in the catalytic mechanism. A complex of the enzyme with a tetra-GlcNAc molecule has been elaborated, using the experimental interactions observed for the bound GlcNAc saccharides. This model allows to define four major substrate interacting regions in the enzyme, comprising residues located around the catalytic Glu67 (His66 and Thr69), the short segment E89-R90 containing the second catalytic residue Glu89, the region 120-124 (residues Ser120, Trp121, Tyr123, and Asn124), and the alpha-helical segment 198-202 (residues Ile198, Asn199, Gly201, and Leu202). Water molecules from the crystal structure were introduced during the modeling procedure, allowing to pinpoint several additional residues involved in ligand binding that were not previously reported in studies of poly-GlcNAc/family 19 chitinase complexes. This work underlines the role played by water-mediated hydrogen bonding in substrate binding as well as in the catalytic mechanism of the GH family 19 chitinases. Finally, a new sequence motif for family 19 chitinases has been identified between residues Tyr111 and Tyr125.
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===Crystal Structure of GH family 19 chitinase from Carica papaya===
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X-ray Structure of Papaya Chitinase Reveals the Substrate Binding Mode of Glycosyl Hydrolase Family 19 Chitinases.,Huet J, Rucktooa P, Clantin B, Azarkan M, Looze Y, Villeret V, Wintjens R Biochemistry. 2008 Aug 12;47(32):8283-91. Epub 2008 Jul 18. PMID:18636748<ref>PMID:18636748</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3cql" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_18636748}}, adds the Publication Abstract to the page
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*[[Chitinase 3D structures|Chitinase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 18636748 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_18636748}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[3cql]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CQL OCA].
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==Reference==
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<ref group="xtra">PMID:18636748</ref><ref group="xtra">PMID:18453704</ref><ref group="xtra">PMID:17115118</ref><references group="xtra"/>
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[[Category: Carica papaya]]
[[Category: Carica papaya]]
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[[Category: Chitinase]]
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[[Category: Large Structures]]
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[[Category: Azarkan, M.]]
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[[Category: Azarkan M]]
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[[Category: Clantin, B.]]
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[[Category: Clantin B]]
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[[Category: Huet, J.]]
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[[Category: Huet J]]
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[[Category: Looze, Y.]]
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[[Category: Looze Y]]
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[[Category: Rucktoa, P.]]
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[[Category: Rucktoa P]]
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[[Category: Villeret, V.]]
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[[Category: Villeret V]]
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[[Category: Wintjens, R.]]
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[[Category: Wintjens R]]
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[[Category: Carbohydrate metabolism]]
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[[Category: Chitin degradation]]
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[[Category: Chitin-binding]]
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[[Category: Chitinase]]
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[[Category: Glycosidase]]
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[[Category: Glycosyl hydrolase]]
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[[Category: Hydrolase]]
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[[Category: N-acetyl-d-glucosamine]]
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[[Category: Polysaccharide degradation]]
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[[Category: Vacuole]]
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Current revision

Crystal Structure of GH family 19 chitinase from Carica papaya

PDB ID 3cql

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