2fte

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:25, 14 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2fte.png|left|200px]]
 
-
<!--
+
==Bacteriophage HK97 Expansion Intermediate IV==
-
The line below this paragraph, containing "STRUCTURE_2fte", creates the "Structure Box" on the page.
+
<SX load='2fte' size='340' side='right' viewer='molstar' caption='[[2fte]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2fte]] is a 7 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_HK97 Escherichia virus HK97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2FTE FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2fte FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2fte OCA], [https://pdbe.org/2fte PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2fte RCSB], [https://www.ebi.ac.uk/pdbsum/2fte PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2fte ProSAT]</span></td></tr>
-
{{STRUCTURE_2fte| PDB=2fte | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===Bacteriophage HK97 Expansion Intermediate IV===
+
[https://www.uniprot.org/uniprot/CAPSD_BPHK7 CAPSD_BPHK7] Assembles to form an icosahedral capsid of 66 nm, with a T=7 laevo symmetry (PubMed:11000116, PubMed:21276801). Responsible for its self-assembly into a procapsid. The phage does not need to encode a separate scaffolfing protein because its capsid protein contains the delta domain that carries that function.<ref>PMID:11000116</ref> <ref>PMID:21276801</ref> <ref>PMID:7669350</ref> <ref>PMID:7723020</ref>
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_17098191}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 17098191 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ft/2fte_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_17098191}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2fte ConSurf].
-
[[2fte]] is a 7 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_hk97 Enterobacteria phage hk97]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2FTE OCA].
+
<div style="clear:both"></div>
-
 
+
== References ==
-
==Reference==
+
<references/>
-
<ref group="xtra">PMID:17098191</ref><ref group="xtra">PMID:15175152</ref><references group="xtra"/>
+
__TOC__
-
[[Category: Enterobacteria phage hk97]]
+
</SX>
-
[[Category: Cheng, N.]]
+
[[Category: Escherichia virus HK97]]
-
[[Category: Conway, J F.]]
+
[[Category: Large Structures]]
-
[[Category: Duda, R L.]]
+
[[Category: Cheng N]]
-
[[Category: Firek, B A.]]
+
[[Category: Conway JF]]
-
[[Category: Gan, L.]]
+
[[Category: Duda RL]]
-
[[Category: Hendrix, R W.]]
+
[[Category: Firek BA]]
-
[[Category: Johnson, J E.]]
+
[[Category: Gan L]]
-
[[Category: Lander, G.]]
+
[[Category: Hendrix RW]]
-
[[Category: Liljas, L.]]
+
[[Category: Johnson JE]]
-
[[Category: Speir, J A.]]
+
[[Category: Lander G]]
-
[[Category: Bacteriophage]]
+
[[Category: Liljas L]]
-
[[Category: Capsid protein]]
+
[[Category: Speir JA]]
-
[[Category: Expansion intermediate]]
+
-
[[Category: Hk97]]
+
-
[[Category: Virus/viral protein complex]]
+

Current revision

Bacteriophage HK97 Expansion Intermediate IV

2fte

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2fte"
Personal tools