This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1dwl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1dwl" [edit=sysop:move=sysop])
Current revision (09:54, 20 March 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1dwl.png|left|200px]]
 
-
<!--
+
==The Ferredoxin-Cytochrome complex using heteronuclear NMR and docking simulation==
-
The line below this paragraph, containing "STRUCTURE_1dwl", creates the "Structure Box" on the page.
+
<StructureSection load='1dwl' size='340' side='right'caption='[[1dwl]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1dwl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfomicrobium_norvegicum Desulfomicrobium norvegicum] and [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DWL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DWL FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Hybrid , Solution NMR , Theoretical Model</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr>
-
{{STRUCTURE_1dwl| PDB=1dwl | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dwl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dwl OCA], [https://pdbe.org/1dwl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dwl RCSB], [https://www.ebi.ac.uk/pdbsum/1dwl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dwl ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/FER1_DESNO FER1_DESNO] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dw/1dwl_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dwl ConSurf].
 +
<div style="clear:both"></div>
-
===THE FERREDOXIN-CYTOCHROME COMPLEX USING HETERONUCLEAR NMR AND DOCKING SIMULATION===
+
==See Also==
-
 
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-
 
+
*[[Ferredoxin 3D structures|Ferredoxin 3D structures]]
-
<!--
+
__TOC__
-
The line below this paragraph, {{ABSTRACT_PUBMED_10704202}}, adds the Publication Abstract to the page
+
</StructureSection>
-
(as it appears on PubMed at http://www.pubmed.gov), where 10704202 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_10704202}}
+
-
 
+
-
==About this Structure==
+
-
[[1dwl]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfomicrobium_norvegicum Desulfomicrobium norvegicum] and [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DWL OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:10704202</ref><ref group="xtra">PMID:10813819</ref><ref group="xtra">PMID:10571064</ref><references group="xtra"/>
+
[[Category: Desulfomicrobium norvegicum]]
[[Category: Desulfomicrobium norvegicum]]
-
[[Category: Desulfovibrio vulgaris]]
+
[[Category: Desulfovibrio vulgaris str. Hildenborough]]
-
[[Category: Czjzek, M.]]
+
[[Category: Large Structures]]
-
[[Category: Guerlesquin, F.]]
+
[[Category: Czjzek M]]
-
[[Category: Morelli, X.]]
+
[[Category: Guerlesquin F]]
-
[[Category: Palma, P N.]]
+
[[Category: Morelli X]]
-
[[Category: Docking]]
+
[[Category: Palma PN]]
-
[[Category: Electron transfer]]
+
-
[[Category: Ferredoxin-cytochrome complex]]
+
-
[[Category: Heteronuclear nmr]]
+
-
[[Category: Model]]
+

Current revision

The Ferredoxin-Cytochrome complex using heteronuclear NMR and docking simulation

PDB ID 1dwl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1dwl"
Personal tools