1x1v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1x1v" [edit=sysop:move=sysop])
Current revision (08:04, 25 October 2023) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1x1v.png|left|200px]]
 
-
<!--
+
==Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex==
-
The line below this paragraph, containing "STRUCTURE_1x1v", creates the "Structure Box" on the page.
+
<StructureSection load='1x1v' size='340' side='right'caption='[[1x1v]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1x1v]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Musa_acuminata Musa acuminata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X1V FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEZ:HEXANE-1,6-DIOL'>HEZ</scene>, <scene name='pdbligand=MMA:O1-METHYL-MANNOSE'>MMA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
{{STRUCTURE_1x1v| PDB=1x1v | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x1v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1v OCA], [https://pdbe.org/1x1v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x1v RCSB], [https://www.ebi.ac.uk/pdbsum/1x1v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x1v ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8L5H4_MUSAC Q8L5H4_MUSAC]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x1/1x1v_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x1v ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The crystal structure of a complex of methyl-alpha-D-mannoside with banana lectin from Musa paradisiaca reveals two primary binding sites in the lectin, unlike in other lectins with beta-prism I fold which essentially consists of three Greek key motifs. It has been suggested that the fold evolved through successive gene duplication and fusion of an ancestral Greek key motif. In other lectins, all from dicots, the primary binding site exists on one of the three motifs in the three-fold symmetric molecule. Banana is a monocot, and the three motifs have not diverged enough to obliterate sequence similarity among them. Two Greek key motifs in it carry one primary binding site each. A common secondary binding site exists on the third Greek key. Modelling shows that both the primary sites can support 1-2, 1-3, and 1-6 linked mannosides with the second residue interacting in each case primarily with the secondary binding site. Modelling also readily leads to a bound branched mannopentose with the nonreducing ends of the two branches anchored at the two primary binding sites, providing a structural explanation for the lectin's specificity for branched alpha-mannans. A comparison of the dimeric banana lectin with other beta-prism I fold lectins, provides interesting insights into the variability in their quaternary structure.
-
===Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex===
+
Unusual sugar specificity of banana lectin from Musa paradisiaca and its probable evolutionary origin. Crystallographic and modelling studies.,Singh DD, Saikrishnan K, Kumar P, Surolia A, Sekar K, Vijayan M Glycobiology. 2005 Oct;15(10):1025-32. Epub 2005 Jun 15. PMID:15958419<ref>PMID:15958419</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_15958419}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 1x1v" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 15958419 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_15958419}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
[[1x1v]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Musa_acuminata Musa acuminata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1V OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:15958419</ref><ref group="xtra">PMID:15502341</ref><ref group="xtra">PMID:15099743</ref><ref group="xtra">PMID:11902840</ref><references group="xtra"/>
+
[[Category: Musa acuminata]]
[[Category: Musa acuminata]]
-
[[Category: Kumar, P.]]
+
[[Category: Kumar P]]
-
[[Category: Saikrishnan, K.]]
+
[[Category: Saikrishnan K]]
-
[[Category: Sekar, K.]]
+
[[Category: Sekar K]]
-
[[Category: Singh, D D.]]
+
[[Category: Singh DD]]
-
[[Category: Surolia, A.]]
+
[[Category: Surolia A]]
-
[[Category: Vijayan, M.]]
+
[[Category: Vijayan M]]
-
[[Category: All beta sheet protein]]
+
-
[[Category: Beta prism-i fold]]
+
-
[[Category: Mannose specific]]
+
-
[[Category: Sugar binding protein]]
+

Current revision

Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex

PDB ID 1x1v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools