3e0j

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[[Image:3e0j.png|left|200px]]
 
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==X-ray structure of the complex of regulatory subunits of human DNA polymerase delta==
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The line below this paragraph, containing "STRUCTURE_3e0j", creates the "Structure Box" on the page.
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<StructureSection load='3e0j' size='340' side='right'caption='[[3e0j]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3e0j]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E0J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3E0J FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3e0j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3e0j OCA], [https://pdbe.org/3e0j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3e0j RCSB], [https://www.ebi.ac.uk/pdbsum/3e0j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3e0j ProSAT]</span></td></tr>
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{{STRUCTURE_3e0j| PDB=3e0j | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DPOD2_HUMAN DPOD2_HUMAN] The function of the small subunit is not yet clear.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/e0/3e0j_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3e0j ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The eukaryotic DNA polymerase delta (Pol delta) participates in genome replication, homologous recombination, DNA repair and damage tolerance. Regulation of the plethora of Pol delta functions depends on the interaction between the second (p50) and third (p66) non-catalytic subunits. We report the crystal structure of p50*p66(N) complex featuring oligonucleotide binding and phosphodiesterase domains in p50 and winged helix-turn-helix N-terminal domain in p66. Disruption of the interaction between the yeast orthologs of p50 and p66 by strategic amino acid changes leads to cold-sensitivity, sensitivity to hydroxyurea and to reduced UV mutagenesis, mimicking the phenotypes of strains where the third subunit of Pol delta is absent. The second subunits of all B family replicative DNA polymerases in archaea and eukaryotes, except Pol delta, share a three-domain structure similar to p50*p66(N), raising the possibility that a portion of the gene encoding p66 was derived from the second subunit gene relatively late in evolution.
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===X-ray structure of the complex of regulatory subunits of human DNA polymerase delta===
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X-ray structure of the complex of regulatory subunits of human DNA polymerase delta.,Baranovskiy AG, Babayeva ND, Liston VG, Rogozin IB, Koonin EV, Pavlov YI, Vassylyev DG, Tahirov TH Cell Cycle. 2008 Oct;7(19):3026-36. Epub 2008 Oct 4. PMID:18818516<ref>PMID:18818516</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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The line below this paragraph, {{ABSTRACT_PUBMED_18818516}}, adds the Publication Abstract to the page
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<div class="pdbe-citations 3e0j" style="background-color:#fffaf0;"></div>
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(as it appears on PubMed at http://www.pubmed.gov), where 18818516 is the PubMed ID number.
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{{ABSTRACT_PUBMED_18818516}}
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==About this Structure==
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[[3e0j]] is a 8 chain structure of [[DNA polymerase]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3E0J OCA].
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==See Also==
==See Also==
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*[[DNA polymerase]]
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*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
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== References ==
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==Reference==
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<references/>
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<ref group="xtra">PMID:18818516</ref><ref group="xtra">PMID:18765914</ref><references group="xtra"/>
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__TOC__
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[[Category: DNA-directed DNA polymerase]]
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</StructureSection>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Babayeva, N D.]]
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[[Category: Large Structures]]
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[[Category: Baranovskiy, A G.]]
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[[Category: Babayeva ND]]
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[[Category: Pavlov, Y I.]]
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[[Category: Baranovskiy AG]]
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[[Category: Tahirov, T H.]]
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[[Category: Pavlov YI]]
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[[Category: Vassylyev, D G.]]
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[[Category: Tahirov TH]]
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[[Category: Dna polymerase delta]]
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[[Category: Vassylyev DG]]
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[[Category: Dna replication]]
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[[Category: Dna-directed dna polymerase]]
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[[Category: Human]]
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[[Category: Nucleotidyltransferase]]
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[[Category: Nucleus]]
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[[Category: P50 subunit]]
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[[Category: P66 subunit]]
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[[Category: Phosphoprotein]]
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[[Category: Polymorphism]]
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[[Category: Transferase]]
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Current revision

X-ray structure of the complex of regulatory subunits of human DNA polymerase delta

PDB ID 3e0j

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OCA

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