This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1o7c

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "1o7c" [edit=sysop:move=sysop])
Current revision (08:55, 10 April 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1o7c.png|left|200px]]
 
-
<!--
+
==Solution structure of the human TSG-6 Link module in the presence of a hyaluronan octasaccharide==
-
The line below this paragraph, containing "STRUCTURE_1o7c", creates the "Structure Box" on the page.
+
<StructureSection load='1o7c' size='340' side='right'caption='[[1o7c]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1o7c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1O7C FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1o7c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1o7c OCA], [https://pdbe.org/1o7c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1o7c RCSB], [https://www.ebi.ac.uk/pdbsum/1o7c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1o7c ProSAT]</span></td></tr>
-
{{STRUCTURE_1o7c| PDB=1o7c | SCENE= }}
+
</table>
-
 
+
== Function ==
-
===SOLUTION STRUCTURE OF THE HUMAN TSG-6 LINK MODULE IN THE PRESENCE OF A HYALURONAN OCTASACCHARIDE===
+
[https://www.uniprot.org/uniprot/TSG6_HUMAN TSG6_HUMAN] Possibly involved in cell-cell and cell-matrix interactions during inflammation and tumorigenesis.
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
<!--
+
Check<jmol>
-
The line below this paragraph, {{ABSTRACT_PUBMED_12972412}}, adds the Publication Abstract to the page
+
<jmolCheckbox>
-
(as it appears on PubMed at http://www.pubmed.gov), where 12972412 is the PubMed ID number.
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/o7/1o7c_consurf.spt"</scriptWhenChecked>
-
-->
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
{{ABSTRACT_PUBMED_12972412}}
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1o7c ConSurf].
-
[[1o7c]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1O7C OCA].
+
<div style="clear:both"></div>
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
<ref group="xtra">PMID:12972412</ref><ref group="xtra">PMID:12401803</ref><ref group="xtra">PMID:12011075</ref><ref group="xtra">PMID:11287417</ref><ref group="xtra">PMID:11805075</ref><ref group="xtra">PMID:10903951</ref><ref group="xtra">PMID:9126602</ref><ref group="xtra">PMID:8812829</ref><ref group="xtra">PMID:8797823</ref><ref group="xtra">PMID:1730767</ref><references group="xtra"/>
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Blundell, C D.]]
+
[[Category: Large Structures]]
-
[[Category: Campbell, I D.]]
+
[[Category: Blundell CD]]
-
[[Category: Day, A J.]]
+
[[Category: Campbell ID]]
-
[[Category: Kahmann, J D.]]
+
[[Category: Day AJ]]
-
[[Category: Pickford, A R.]]
+
[[Category: Kahmann JD]]
-
[[Category: Teriete, P.]]
+
[[Category: Pickford AR]]
-
[[Category: Carbohydrate-binding domain]]
+
[[Category: Teriete P]]
-
[[Category: Cell adhesion]]
+
-
[[Category: Glycoprotein]]
+
-
[[Category: Hyaluronan-binding domain]]
+
-
[[Category: Link module]]
+

Current revision

Solution structure of the human TSG-6 Link module in the presence of a hyaluronan octasaccharide

PDB ID 1o7c

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools