2qik

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="2qik" size="350" color="white" frame="true" align="right" spinBox="true" caption="2qik, resolution 1.350&Aring;" /> '''Crystal structure o...)
Current revision (05:27, 17 October 2024) (edit) (undo)
 
(15 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2qik.gif|left|200px]]<br /><applet load="2qik" size="350" color="white" frame="true" align="right" spinBox="true"
 
-
caption="2qik, resolution 1.350&Aring;" />
 
-
'''Crystal structure of YkqA from Bacillus subtilis. Northeast Structural Genomics Target SR631'''<br />
 
-
==About this Structure==
+
==Crystal structure of YkqA from Bacillus subtilis. Northeast Structural Genomics Target SR631==
-
2QIK is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis] with <scene name='pdbligand=CIT:'>CIT</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QIK OCA].
+
<StructureSection load='2qik' size='340' side='right'caption='[[2qik]], [[Resolution|resolution]] 1.35&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[2qik]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QIK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QIK FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qik FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qik OCA], [https://pdbe.org/2qik PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qik RCSB], [https://www.ebi.ac.uk/pdbsum/2qik PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qik ProSAT], [https://www.topsan.org/Proteins/NESGC/2qik TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/YKQA_BACSU YKQA_BACSU] Putative gamma-glutamylcyclotransferase (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qi/2qik_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qik ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Acton, T.B.]]
+
[[Category: Acton TB]]
-
[[Category: Baran, M.C.]]
+
[[Category: Baran MC]]
-
[[Category: Benach, J.]]
+
[[Category: Benach J]]
-
[[Category: Chen, C.X.]]
+
[[Category: Chen CX]]
-
[[Category: Chen, Y.]]
+
[[Category: Chen Y]]
-
[[Category: Cunningham, K.]]
+
[[Category: Cunningham K]]
-
[[Category: Forouhar, F.]]
+
[[Category: Forouhar F]]
-
[[Category: Hunt, J.F.]]
+
[[Category: Hunt JF]]
-
[[Category: Janjua, H.]]
+
[[Category: Janjua H]]
-
[[Category: Ma, L-C.]]
+
[[Category: Ma L-C]]
-
[[Category: Montelione, G.T.]]
+
[[Category: Montelione GT]]
-
[[Category: NESG, Northeast.Structural.Genomics.Consortium.]]
+
[[Category: Owens L]]
-
[[Category: Owens, L.]]
+
[[Category: Rong X]]
-
[[Category: Rong, X.]]
+
[[Category: Seetharaman J]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Tong L]]
-
[[Category: Tong, L.]]
+
-
[[Category: CIT]]
+
-
[[Category: nesg]]
+
-
[[Category: northeast structural genomics consortium]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: sr631]]
+
-
[[Category: structural genomics]]
+
-
[[Category: ykqa]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jan 23 14:27:16 2008''
+

Current revision

Crystal structure of YkqA from Bacillus subtilis. Northeast Structural Genomics Target SR631

PDB ID 2qik

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2qik"
Personal tools