This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2qip
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="2qip" size="350" color="white" frame="true" align="right" spinBox="true" caption="2qip, resolution 1.48Å" /> '''Crystal structure of...) |
|||
| (14 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2qip.gif|left|200px]]<br /><applet load="2qip" size="350" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="2qip, resolution 1.48Å" /> | ||
| - | '''Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633'''<br /> | ||
| - | == | + | ==Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633== |
| - | + | <StructureSection load='2qip' size='340' side='right'caption='[[2qip]], [[Resolution|resolution]] 1.48Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| + | <table><tr><td colspan='2'>[[2qip]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2QIP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2QIP FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | ||
| + | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VPA0982 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=223926 VIBPA])</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2qip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2qip OCA], [https://pdbe.org/2qip PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2qip RCSB], [https://www.ebi.ac.uk/pdbsum/2qip PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2qip ProSAT], [https://www.topsan.org/Proteins/MCSG/2qip TOPSAN]</span></td></tr> | ||
| + | </table> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/qi/2qip_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2qip ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Vibpa]] | ||
| + | [[Category: Duggan, E]] | ||
| + | [[Category: Joachimiak, A]] | ||
| + | [[Category: Structural genomic]] | ||
| + | [[Category: Moy, S]] | ||
| + | [[Category: Tan, K]] | ||
| + | [[Category: Apc85975]] | ||
| + | [[Category: Mcsg]] | ||
| + | [[Category: PSI, Protein structure initiative]] | ||
| + | [[Category: Unknown function]] | ||
[[Category: Vibrio parahaemolyticus rimd 2210633]] | [[Category: Vibrio parahaemolyticus rimd 2210633]] | ||
| - | [[Category: | + | [[Category: Vpa0982]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of a protein of unknown function VPA0982 from Vibrio parahaemolyticus RIMD 2210633
| |||||||||||
