3g0i

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[[Image:3g0i.png|left|200px]]
 
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==Complex of Aspergillus niger epoxide hydrolase with valpromide (2-propylpentanamide)==
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The line below this paragraph, containing "STRUCTURE_3g0i", creates the "Structure Box" on the page.
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<StructureSection load='3g0i' size='340' side='right'caption='[[3g0i]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3g0i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_niger Aspergillus niger]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G0I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3G0I FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=VPR:2-PROPYLPENTANAMIDE'>VPR</scene></td></tr>
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{{STRUCTURE_3g0i| PDB=3g0i | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3g0i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3g0i OCA], [https://pdbe.org/3g0i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3g0i RCSB], [https://www.ebi.ac.uk/pdbsum/3g0i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3g0i ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q9UR30_ASPNG Q9UR30_ASPNG]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/g0/3g0i_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3g0i ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Directed evolution of enzymes as enantioselective catalysts in organic chemistry is an alternative to traditional asymmetric catalysis using chiral transition-metal complexes or organocatalysts, the different approaches often being complementary. Moreover, directed evolution studies allow us to learn more about how enzymes perform mechanistically. The present study concerns a previously evolved highly enantioselective mutant of the epoxide hydrolase from Aspergillus niger in the hydrolytic kinetic resolution of racemic glycidyl phenyl ether. Kinetic data, molecular dynamics calculations, molecular modeling, inhibition experiments, and X-ray structural work for the wild-type (WT) enzyme and the best mutant reveal the basis of the large increase in enantioselectivity (E = 4.6 versus E = 115). The overall structures of the WT and the mutant are essentially identical, but dramatic differences are observed in the active site as revealed by the X-ray structures. All of the experimental and computational results support a model in which productive positioning of the preferred (S)-glycidyl phenyl ether, but not the (R)-enantiomer, forms the basis of enhanced enantioselectivity. Predictions regarding substrate scope and enantioselectivity of the best mutant are shown to be possible.
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===Complex of Aspergillus niger epoxide hydrolase with valpromide (2-propylpentanamide)===
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Directed evolution of an enantioselective epoxide hydrolase: uncovering the source of enantioselectivity at each evolutionary stage.,Reetz MT, Bocola M, Wang LW, Sanchis J, Cronin A, Arand M, Zou J, Archelas A, Bottalla AL, Naworyta A, Mowbray SL J Am Chem Soc. 2009 Jun 3;131(21):7334-43. PMID:19469578<ref>PMID:19469578</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3g0i" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_19469578}}, adds the Publication Abstract to the page
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*[[Epoxide hydrolase 3D structures|Epoxide hydrolase 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 19469578 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_19469578}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[3g0i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspergillus_niger Aspergillus niger]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3G0I OCA].
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==Reference==
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<ref group="xtra">PMID:19469578</ref><ref group="xtra">PMID:10673439</ref><references group="xtra"/>
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[[Category: Aspergillus niger]]
[[Category: Aspergillus niger]]
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[[Category: Microsomal epoxide hydrolase]]
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[[Category: Large Structures]]
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[[Category: Mowbray, S L.]]
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[[Category: Mowbray SL]]
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[[Category: Zou, J.]]
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[[Category: Zou J]]
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[[Category: 2-propylpentanamide]]
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[[Category: Alpha/beta hydrolase fold]]
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[[Category: Epoxide hydrolase]]
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[[Category: Hydrolase]]
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[[Category: Valpromide]]
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Current revision

Complex of Aspergillus niger epoxide hydrolase with valpromide (2-propylpentanamide)

PDB ID 3g0i

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