2xji

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:39, 16 August 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2xji.png|left|200px]]
 
-
<!--
+
==Structure and Copper-binding Properties of Methanobactins from Methylosinus trichosporium OB3b==
-
The line below this paragraph, containing "STRUCTURE_2xji", creates the "Structure Box" on the page.
+
<StructureSection load='2xji' size='340' side='right'caption='[[2xji]], [[Resolution|resolution]] 1.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2xji]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylosinus_trichosporium_OB3b Methylosinus trichosporium OB3b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XJI FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BB9:(2Z)-2-AMINO-3-SULFANYLPROP-2-ENOIC+ACID'>BB9</scene>, <scene name='pdbligand=COI:2-OXO-4-METHYLPENTANOIC+ACID'>COI</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=PRD_000762:METHANOBACTIN'>PRD_000762</scene></td></tr>
-
{{STRUCTURE_2xji| PDB=2xji | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xji FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xji OCA], [https://pdbe.org/2xji PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xji RCSB], [https://www.ebi.ac.uk/pdbsum/2xji PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xji ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/MBCTN_METTR MBCTN_METTR] Chalkophore involved in scavenging, uptake and suppression of toxicity of copper. Each apo-methanobactin (apo-mb) complexes 1 Cu(2+) or Cu(1+) ion to form Cu(1+)-mb (Cu-mb) which is then taken up by the cell. Enhances growth rate in the presence of copper and reduces growth lag upon exposition to elevated levels of copper. Cu-mb contributes to the switchover from soluble methane monooxygenase (sMMO) to the membrane-bound particulate MMO (pMMO) by inducing transcription of pMMO subunit A. It also stimulates the enzymatic activity of pMMO. In the absence of copper, binds other metal ions, like Zn(2+), Ag(1+), Au(3+), Co(2+), Cd(2+), Fe(3+), Hg(2+), Mn(2+), Ni(2+), Pb(2+) or U(6+), but not Ba(2+), Ca(2+), La(2+), Mg(2+) or Sr(2+). Uptake is an active process, which may involve TonB-dependent transporters, and as such does not involve porins. Cu-Mb can be taken up by other methanotrophic bacteria but not by E.coli. Has Cu-dependent superoxide dismutase-like activity. Shows reductant-dependent oxidase and hydrogen peroxide reductase activities. Reduces copper-levels in liver in a rat model of Wilson disease.<ref>PMID:15361623</ref> <ref>PMID:15794651</ref> <ref>PMID:16332035</ref> <ref>PMID:16207923</ref> <ref>PMID:16445286</ref> <ref>PMID:17070918</ref> <ref>PMID:17615240</ref> <ref>PMID:18372044</ref> <ref>PMID:20961038</ref> <ref>PMID:20817303</ref> <ref>PMID:21254756</ref> <ref>PMID:21900235</ref> <ref>PMID:21242075</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Methanobactins (mbs) are a class of copper-binding peptides produced by aerobic methane oxidizing bacteria (methanotrophs) that have been linked to the substantial copper needs of these environmentally important microorganisms. The only characterized mbs are those from Methylosinus trichosporium OB3b and Methylocystis strain SB2. M. trichosporium OB3b produces a second mb (mb-Met), which is missing the C-terminal Met residue from the full-length form (FL-mb). The as-isolated copper-loaded mbs bind Cu(I). The absence of the Met has little influence on the structure of the Cu(I) site, and both molecules mediate switchover from the soluble iron methane mono-oxygenase to the particulate copper-containing enzyme in M. trichosporium OB3b cells. Cu(II) is reduced in the presence of the mbs under our experimental conditions, and the disulfide plays no role in this process. The Cu(I) affinities of these molecules are extremely high with values of (6-7) x 10(20) M(-1) determined at pH &gt;/= 8.0. The affinity for Cu(I) is 1 order of magnitude lower at pH 6.0. The reduction potentials of copper-loaded FL-mb and mb-Met are 640 and 590 mV respectively, highlighting the strong preference for Cu(I) and indicating different Cu(II) affinities for the two forms. Cleavage of the disulfide bridge results in a decrease in the Cu(I) affinity to approximately 9 x 10(18) M(-1) at pH 7.5. The two thiolates can also bind Cu(I), albeit with much lower affinity ( approximately 3 x 10(15) M(-1) at pH 7.5). The high affinity of mbs for Cu(I) is consistent with a physiological role in copper uptake and protection.
-
===STRUCTURE AND COPPER-BINDING PROPERTIES OF METHANOBACTINS FROM METHYLOSINUS TRICHOSPORIUM OB3B===
+
Copper-Binding Properties and Structures of Methanobactins from Methylosinus trichosporium OB3b.,El Ghazouani A, Basle A, Firbank SJ, Knapp CW, Gray J, Graham DW, Dennison C Inorg Chem. 2011 Jan 21. PMID:21254756<ref>PMID:21254756</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_21254756}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 2xji" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 21254756 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_21254756}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
[[2xji]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Methylosinus_trichosporium Methylosinus trichosporium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XJI OCA].
+
[[Category: Methylosinus trichosporium OB3b]]
-
 
+
[[Category: Basle A]]
-
==Reference==
+
[[Category: Dennison C]]
-
<ref group="xtra">PMID:21254756</ref><ref group="xtra">PMID:15361623</ref><ref group="xtra">PMID:18729522</ref><references group="xtra"/>
+
[[Category: El-Ghazouani A]]
-
[[Category: Methylosinus trichosporium]]
+
[[Category: Firbank SJ]]
-
[[Category: Basle, A.]]
+
[[Category: Graham DW]]
-
[[Category: Dennison, C.]]
+
[[Category: Gray J]]
-
[[Category: El-Ghazouani, A.]]
+
[[Category: Knapp CW]]
-
[[Category: Firbank, S J.]]
+
-
[[Category: Graham, D W.]]
+
-
[[Category: Gray, J.]]
+
-
[[Category: Knapp, C W.]]
+

Current revision

Structure and Copper-binding Properties of Methanobactins from Methylosinus trichosporium OB3b

PDB ID 2xji

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2xji"
Personal tools