1we0
From Proteopedia
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| - | [[Image:1we0.png|left|200px]] | ||
| - | < | + | ==Crystal structure of peroxiredoxin (AhpC) from Amphibacillus xylanus== |
| - | + | <StructureSection load='1we0' size='340' side='right'caption='[[1we0]], [[Resolution|resolution]] 2.90Å' scene=''> | |
| - | You may | + | == Structural highlights == |
| - | + | <table><tr><td colspan='2'>[[1we0]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Amphibacillus_xylanus Amphibacillus xylanus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WE0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WE0 FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9Å</td></tr> | |
| - | - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH4:AMMONIUM+ION'>NH4</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1we0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1we0 OCA], [https://pdbe.org/1we0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1we0 RCSB], [https://www.ebi.ac.uk/pdbsum/1we0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1we0 ProSAT]</span></td></tr> | |
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/AHPC_AMPXN AHPC_AMPXN] Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.<ref>PMID:10960086</ref> | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/we/1we0_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1we0 ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | AhpC protein, purified from Amphibacillus xylanus with a molecular mass of 20.8 kDa, protects cells against oxidation damage. The enzyme catalyses the reduction of hydroperoxides in cooperation with the 55 kDa flavoprotein, A. xylanus NADH oxidase (NADH oxidase-AhpC system). A. xylanus AhpC has two disulfide linkages between monomers and can act in the homodimer form. Gel-filtration column chromatography and dynamic light scattering (DLS) suggest that A. xylanus AhpC also forms a large oligomeric assembly (10-12 mers). A. xylanus AhpC was crystallized and X-ray diffraction data were collected to 3.0 A. The self-rotation function revealed fivefold and twofold axes located perpendicularly to each other, suggesting that the molecular assembly of A. xylanus AhpC is composed of ten monomers. The oligomerization of A. xylanus AhpC is affected by ionic strength in the DLS measurements. The H(2)O(2) reductase activity of the A. xylanus NADH oxidase-AhpC system is also affected by ionic strength, and it was found that the decamerization of AhpC might be required for the activation of the NADH oxidase-AhpC system. | ||
| - | + | Stimulation of peroxidase activity by decamerization related to ionic strength: AhpC protein from Amphibacillus xylanus.,Kitano K, Niimura Y, Nishiyama Y, Miki K J Biochem. 1999 Aug;126(2):313-9. PMID:010423523<ref>PMID:010423523</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | + | <div class="pdbe-citations 1we0" style="background-color:#fffaf0;"></div> | |
==See Also== | ==See Also== | ||
| - | *[[Peroxiredoxin]] | + | *[[Peroxiredoxin 3D structures|Peroxiredoxin 3D structures]] |
| - | + | == References == | |
| - | == | + | <references/> |
| - | < | + | __TOC__ |
| + | </StructureSection> | ||
[[Category: Amphibacillus xylanus]] | [[Category: Amphibacillus xylanus]] | ||
| - | [[Category: Hakoshima | + | [[Category: Large Structures]] |
| - | [[Category: Kita | + | [[Category: Hakoshima T]] |
| - | [[Category: Kitano | + | [[Category: Kita A]] |
| - | [[Category: Miki | + | [[Category: Kitano K]] |
| - | [[Category: Niimura | + | [[Category: Miki K]] |
| - | + | [[Category: Niimura Y]] | |
| - | + | ||
| - | + | ||
Current revision
Crystal structure of peroxiredoxin (AhpC) from Amphibacillus xylanus
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