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3akf

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[[Image:3akf.png|left|200px]]
 
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==Crystal structure of exo-1,5-alpha-L-arabinofuranosidase==
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The line below this paragraph, containing "STRUCTURE_3akf", creates the "Structure Box" on the page.
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<StructureSection load='3akf' size='340' side='right'caption='[[3akf]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3akf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_avermitilis_MA-4680_=_NBRC_14893 Streptomyces avermitilis MA-4680 = NBRC 14893]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AKF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AKF FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
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{{STRUCTURE_3akf| PDB=3akf | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3akf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3akf OCA], [https://pdbe.org/3akf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3akf RCSB], [https://www.ebi.ac.uk/pdbsum/3akf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3akf ProSAT]</span></td></tr>
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</table>
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===Crystal structure of exo-1,5-alpha-L-arabinofuranosidase===
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== Function ==
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[https://www.uniprot.org/uniprot/IABF_STRAW IABF_STRAW] Involved in the degradation of arabinan and is a key enzyme in the complete degradation of the plant cell wall. Catalyzes only the cleavage of terminal alpha-(1->5) arabinofuranosyl bonds of arabinan present in the arabinofuranosyl polysaccharides or oligosaccharides. It cannot act on other arabinose-containing polysaccharides and arabinoxylo-oligosaccharides.<ref>PMID:18665359</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 20739278 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ak/3akf_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_20739278}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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[[3akf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_avermitilis Streptomyces avermitilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AKF OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3akf ConSurf].
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<div style="clear:both"></div>
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==Reference==
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== References ==
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<ref group="xtra">PMID:20739278</ref><ref group="xtra">PMID:18997327</ref><ref group="xtra">PMID:18665359</ref><references group="xtra"/>
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<references/>
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[[Category: Alpha-N-arabinofuranosidase]]
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__TOC__
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[[Category: Streptomyces avermitilis]]
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</StructureSection>
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[[Category: Fujimoto, Z.]]
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[[Category: Large Structures]]
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[[Category: Ichinose, H.]]
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[[Category: Streptomyces avermitilis MA-4680 = NBRC 14893]]
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[[Category: Kaneko, S.]]
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[[Category: Fujimoto Z]]
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[[Category: Beta-trefoil]]
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[[Category: Ichinose H]]
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[[Category: Five-bladed beta propeller]]
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[[Category: Kaneko S]]
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[[Category: Hydrolase]]
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Current revision

Crystal structure of exo-1,5-alpha-L-arabinofuranosidase

PDB ID 3akf

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