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3i5x

From Proteopedia

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[[Image:3i5x.png|left|200px]]
 
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==Structure of Mss116p bound to ssRNA and AMP-PNP==
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The line below this paragraph, containing "STRUCTURE_3i5x", creates the "Structure Box" on the page.
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<StructureSection load='3i5x' size='340' side='right'caption='[[3i5x]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[3i5x]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I5X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3I5X FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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{{STRUCTURE_3i5x| PDB=3i5x | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3i5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3i5x OCA], [https://pdbe.org/3i5x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3i5x RCSB], [https://www.ebi.ac.uk/pdbsum/3i5x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3i5x ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/MS116_YEAST MS116_YEAST] ATP-dependent RNA helicase required for mitochondrial splicing of group I and II introns. Specifically involved in the ATP-dependent splicing of the bl1 intron of COB. Also required for efficient mitochondrial translation.<ref>PMID:2535893</ref> <ref>PMID:7567443</ref> <ref>PMID:12402239</ref> <ref>PMID:15618406</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i5/3i5x_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3i5x ConSurf].
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<div style="clear:both"></div>
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===Structure of Mss116p bound to ssRNA and AMP-PNP===
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==See Also==
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*[[Helicase 3D structures|Helicase 3D structures]]
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== References ==
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<references/>
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__TOC__
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(as it appears on PubMed at http://www.pubmed.gov), where 19748356 is the PubMed ID number.
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</StructureSection>
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[[Category: Large Structures]]
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{{ABSTRACT_PUBMED_19748356}}
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==About this Structure==
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[[3i5x]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3I5X OCA].
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==Reference==
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<ref group="xtra">PMID:19748356</ref><ref group="xtra">PMID:19652352</ref><references group="xtra"/>
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[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
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[[Category: Campo, M Del.]]
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[[Category: Del Campo M]]
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[[Category: Lambowitz, A M.]]
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[[Category: Lambowitz AM]]
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[[Category: Atp-binding]]
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[[Category: Dead-box]]
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[[Category: Helicase]]
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[[Category: Hydrolase]]
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[[Category: Hydrolase/rna complex]]
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[[Category: Mitochondrion]]
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[[Category: Mrna processing]]
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[[Category: Mrna splicing]]
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[[Category: Nucleotide-binding]]
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[[Category: Protein-rna complex]]
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[[Category: Rna helicase]]
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[[Category: Rna-binding]]
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[[Category: Transit peptide]]
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[[Category: Translation regulation]]
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Current revision

Structure of Mss116p bound to ssRNA and AMP-PNP

PDB ID 3i5x

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