2nm1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2nm1" [edit=sysop:move=sysop])
Current revision (10:16, 30 August 2023) (edit) (undo)
 
(7 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2nm1.png|left|200px]]
 
-
<!--
+
==Structure of BoNT/B in complex with its protein receptor==
-
The line below this paragraph, containing "STRUCTURE_2nm1", creates the "Structure Box" on the page.
+
<StructureSection load='2nm1' size='340' side='right'caption='[[2nm1]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2nm1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_botulinum Clostridium botulinum] and [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NM1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NM1 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nm1 OCA], [https://pdbe.org/2nm1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nm1 RCSB], [https://www.ebi.ac.uk/pdbsum/2nm1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nm1 ProSAT]</span></td></tr>
-
{{STRUCTURE_2nm1| PDB=2nm1 | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/BXB_CLOBO BXB_CLOBO] Botulinum toxin acts by inhibiting neurotransmitter release. It binds to peripheral neuronal synapses, is internalized and moves by retrograde transport up the axon into the spinal cord where it can move between postsynaptic and presynaptic neurons. It inhibits neurotransmitter release by acting as a zinc endopeptidase that cleaves the '76-Gln-|-Phe-77' bond of synaptobrevin-2.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nm/2nm1_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2nm1 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Botulinum neurotoxins (BoNTs) are produced by Clostridium botulinum and cause the neuroparalytic syndrome of botulism. With a lethal dose of 1 ng kg(-1), they pose a biological hazard to humans and a serious potential bioweapon threat. BoNTs bind with high specificity at neuromuscular junctions and they impair exocytosis of synaptic vesicles containing acetylcholine through specific proteolysis of SNAREs (soluble N-ethylmaleimide-sensitive fusion protein attachment protein receptors), which constitute part of the synaptic vesicle fusion machinery. The molecular details of the toxin-cell recognition have been elusive. Here we report the structure of a BoNT in complex with its protein receptor: the receptor-binding domain of botulinum neurotoxin serotype B (BoNT/B) bound to the luminal domain of synaptotagmin II, determined at 2.15 A resolution. On binding, a helix is induced in the luminal domain which binds to a saddle-shaped crevice on a distal tip of BoNT/B. This crevice is adjacent to the non-overlapping ganglioside-binding site of BoNT/B. Synaptotagmin II interacts with BoNT/B with nanomolar affinity, at both neutral and acidic endosomal pH. Biochemical and neuronal ex vivo studies of structure-based mutations indicate high specificity and affinity of the interaction, and high selectivity of BoNT/B among synaptotagmin I and II isoforms. Synergistic binding of both synaptotagmin and ganglioside imposes geometric restrictions on the initiation of BoNT/B translocation after endocytosis. Our results provide the basis for the rational development of preventive vaccines or inhibitors against these neurotoxins.
-
===Structure of BoNT/B in complex with its protein receptor===
+
Botulinum neurotoxin B recognizes its protein receptor with high affinity and specificity.,Jin R, Rummel A, Binz T, Brunger AT Nature. 2006 Dec 21;444(7122):1092-5. Epub 2006 Dec 13. PMID:17167421<ref>PMID:17167421</ref>
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2nm1" style="background-color:#fffaf0;"></div>
-
<!--
+
==See Also==
-
The line below this paragraph, {{ABSTRACT_PUBMED_17167421}}, adds the Publication Abstract to the page
+
*[[Botulinum neurotoxin 3D structures|Botulinum neurotoxin 3D structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 17167421 is the PubMed ID number.
+
*[[Synaptotagmin 3D structures|Synaptotagmin 3D structures]]
-
-->
+
== References ==
-
{{ABSTRACT_PUBMED_17167421}}
+
<references/>
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
[[2nm1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_botulinum Clostridium botulinum] and [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NM1 OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:17167421</ref><ref group="xtra">PMID:10932256</ref><ref group="xtra">PMID:15781237</ref><references group="xtra"/>
+
-
[[Category: Bontoxilysin]]
+
[[Category: Clostridium botulinum]]
[[Category: Clostridium botulinum]]
 +
[[Category: Large Structures]]
[[Category: Rattus norvegicus]]
[[Category: Rattus norvegicus]]
-
[[Category: Binz, T.]]
+
[[Category: Binz T]]
-
[[Category: Brunger, A T.]]
+
[[Category: Brunger AT]]
-
[[Category: Jin, R.]]
+
[[Category: Jin R]]
-
[[Category: Rummel, A.]]
+
[[Category: Rummel A]]
-
[[Category: Botulism]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Neurotransmission]]
+
-
[[Category: Synaptotagmin]]
+
-
[[Category: Toxin]]
+

Current revision

Structure of BoNT/B in complex with its protein receptor

PDB ID 2nm1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools