This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2k4l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "2k4l" [edit=sysop:move=sysop])
Current revision (06:44, 1 May 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2k4l.png|left|200px]]
 
-
<!--
+
==Solution structure of a 2:1C2-(2-naphthyl)pyrrolo[2,1-c][1,4]benzodiazepine (PBD) DNA adduct: molecular basis for unexpectedly high DNA helix stabilization.==
-
The line below this paragraph, containing "STRUCTURE_2k4l", creates the "Structure Box" on the page.
+
<StructureSection load='2k4l' size='340' side='right'caption='[[2k4l]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2k4l]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2K4L FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PZD:(11AS)-7,8-DIMETHOXY-2-NAPHTHALEN-2-YL-1,10,11,11A-TETRAHYDRO-5H-PYRROLO[2,1-C][1,4]BENZODIAZEPIN-5-ONE'>PZD</scene></td></tr>
-
{{STRUCTURE_2k4l| PDB=2k4l | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2k4l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2k4l OCA], [https://pdbe.org/2k4l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2k4l RCSB], [https://www.ebi.ac.uk/pdbsum/2k4l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2k4l ProSAT]</span></td></tr>
-
 
+
</table>
-
===Solution structure of a 2:1C2-(2-naphthyl)pyrrolo[2,1-c][1,4]benzodiazepine (PBD) DNA adduct: molecular basis for unexpectedly high DNA helix stabilization.===
+
__TOC__
-
 
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
<!--
+
[[Category: Antonow D]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_18925745}}, adds the Publication Abstract to the page
+
[[Category: Barata T]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 18925745 is the PubMed ID number.
+
[[Category: Howard PW]]
-
-->
+
[[Category: Jenkins TC]]
-
{{ABSTRACT_PUBMED_18925745}}
+
[[Category: Parkinson GN]]
-
 
+
[[Category: Thurston DE]]
-
==About this Structure==
+
[[Category: Zloh M]]
-
[[2k4l]] is a 2 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2K4L OCA].
+
-
 
+
-
==Reference==
+
-
<ref group="xtra">PMID:18925745</ref><ref group="xtra">PMID:17397227</ref><references group="xtra"/>
+
-
[[Category: Antonow, D.]]
+
-
[[Category: Barata, T.]]
+
-
[[Category: Howard, P W.]]
+
-
[[Category: Jenkins, T C.]]
+
-
[[Category: Parkinson, G N.]]
+
-
[[Category: Thurston, D E.]]
+
-
[[Category: Zloh, M.]]
+
-
[[Category: Dna]]
+
-
[[Category: Dna adduct]]
+
-
[[Category: Pbd]]
+

Current revision

Solution structure of a 2:1C2-(2-naphthyl)pyrrolo[2,1-c][1,4]benzodiazepine (PBD) DNA adduct: molecular basis for unexpectedly high DNA helix stabilization.

PDB ID 2k4l

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools